Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j24
         (255 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    83   8e-18
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   0.40 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   0.69 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   2.8  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    23   4.9  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    23   4.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    23   4.9  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    23   6.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    23   6.4  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    23   6.4  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    23   8.5  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    23   8.5  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    23   8.5  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    23   8.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 82.6 bits (195), Expect = 8e-18
 Identities = 42/85 (49%), Positives = 55/85 (64%)
 Frame = +1

Query: 1   KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTXXNKVMKDILGRFKELQFFTGESMDCDG 180
           KKSY  Y+K YMK + A+L+E  P++V VF+      +K IL  FK+  F+ GESMD D 
Sbjct: 81  KKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDA 140

Query: 181 MVAMMEYRDFDGTQIPIMMFFKHGL 255
           MV +M YR+ DG   P M+FFK GL
Sbjct: 141 MVVLMNYRE-DGI-TPYMIFFKDGL 163


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 228 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 136
           WY++T K+SI    N+  + +R P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 226 VFAYHQSLYIPSWQPC-HHN 170
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 43  LVAKLEEKAPDQVEVFKTXXNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 204
           ++ K   KAP +   F++  N   K  +  FK+  +      D D +V + +++
Sbjct: 587 IIGKWYYKAPKEFATFESAKNLNGKSFVDNFKDRYYM--YKQDIDNVVGLKDFK 638


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 150 ELKFLKPAEDVFHYFVXXCFKYFNLVR 70
           +  FLKP   ++ YF+    +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 116 KTSSAGLRNFSSLLGSLWIVMA 181
           K   AG++ FS   G LW  +A
Sbjct: 240 KVFRAGIKRFSDQAGKLWTYLA 261


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 131 LPRMSFITLFXXVLNTSTWSGAFSSNFAT 45
           LPR+    LF  ++N  T +G+F ++  T
Sbjct: 352 LPRLRKQWLFYDLMNAKTLTGSFDNSMFT 380


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 228 WYLRTIKVSIFHHGNHAITIHRL 160
           WYL  +K S   HG   + I RL
Sbjct: 393 WYLDLMKYSNAPHGGFGLGIERL 415


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 137 RNFSSLLGSLWIVMAWLP*WN 199
           +NF   L SL+ ++ WLP +N
Sbjct: 97  KNFLHYLKSLFPIIEWLPNYN 117


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 248 CLKNIMIGICVPSKSLYSI 192
           CL +I  GI + S+SLY++
Sbjct: 327 CLSSINSGIYIGSRSLYNL 345


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 215 PSKSLYSIMATMPSQSIDSPVKN*SSLNLPRMSF 114
           PS SLYS+  +  + S  SP+    + N P+ SF
Sbjct: 433 PSSSLYSLSESSINYSTQSPMY--YNYNYPQPSF 464


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 109 VMKDILGRFKELQFFTGESMD 171
           V++DILG+F   +F T ++++
Sbjct: 184 VVRDILGKFPREKFATTQALE 204


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 537

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 33 YEKISSKIGREGA 71
          Y+K  S+IGREGA
Sbjct: 4  YKKEKSRIGREGA 16


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 13  TLYLKDYMKKLVAKLEEKAPDQVEVFKT 96
           T+YLK   + L  K +   PD VE   T
Sbjct: 108 TIYLKQMARILSEKFQGDIPDTVEDLMT 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,185
Number of Sequences: 5004
Number of extensions: 17021
Number of successful extensions: 43
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)