Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7j24
(255 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 64 1e-11
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 31 0.13
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 1.6
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 27 2.1
08_01_0686 + 6049563-6050900 27 2.1
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42... 27 2.8
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61... 27 2.8
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 26 3.6
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 26 3.6
01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511 26 3.6
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 26 4.8
02_05_0172 + 26460884-26461084,26461168-26461391,26461726-264617... 26 4.8
04_04_0821 - 28349662-28350027 25 8.4
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285 25 8.4
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319 25 8.4
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 25 8.4
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 64.1 bits (149), Expect = 1e-11
Identities = 34/85 (40%), Positives = 48/85 (56%)
Frame = +1
Query: 1 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTXXNKVMKDILGRFKELQFFTGESMDCDG 180
KK + ++K Y+K L AKL+ ++ E FK K +LG+ K+LQFF GESM DG
Sbjct: 84 KKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDG 140
Query: 181 MVAMMEYRDFDGTQIPIMMFFKHGL 255
+ Y+ DG P ++F HGL
Sbjct: 141 GLVFAYYK--DGATDPTFLYFSHGL 163
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 198 FHHGNHAITIHRLPSKEL----KFLKPAEDVFHYFVXXCFKYFNLVRRL 64
FHH H ++ PSK+L ++L+ FH F C++Y + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 251 PCL-KNIMIGICVPSKSLYSIMATMPSQSIDSPV 153
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 223 FAYHQSLYIPSWQPCHHN 170
F YH +Y+ SW C H+
Sbjct: 264 FLYHGRMYVSSWHICFHS 281
>08_01_0686 + 6049563-6050900
Length = 445
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 234 HDWYLRTIKVSIFHHGNHAITIHRLPS 154
++ + + + +SI HHGNH + +HR S
Sbjct: 209 YNTFFQVLLLSI-HHGNHQVYLHRFSS 234
>11_01_0056 +
427376-427408,427589-427694,427777-427823,427907-428065,
429018-429092,429379-429973,430529-430943,431105-431118,
431476-431591
Length = 519
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 245 LKNIMIGICVPSKSLYSIMATMPSQSIDSP 156
L N M+G +P+ L S+ +P Q++ P
Sbjct: 187 LPNSMVGFSLPNDGLRSVHRNLPDQALGPP 216
>03_01_0074 +
610948-611184,611745-611867,611983-612082,612167-612213,
612292-612450,613033-613132,613209-613300,613390-614532,
614949-615041,615408-615493,615746-615873,615965-616086,
616202-616270,616380-616518,616624-616686,616887-616930,
617339-617425
Length = 943
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 245 LKNIMIGICVPSKSLYSIMATMPSQSIDSP 156
L N M+G +P++ L S+ +P Q++ P
Sbjct: 332 LPNPMVGFSLPNERLRSVHRNLPDQALGPP 361
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 19 YLKDYMKKLVAKLEEKAPDQVEVFKTXXNKVMKDILGR 132
YL+D ++ KL EK D E+ + + M ++LG+
Sbjct: 253 YLEDSKNEVYMKLAEKRVDCQELSEADFEQAMLEVLGK 290
>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 22 LKDYMKKLV-AKLEEKAPDQVEVFKTXXNKVMKDILGRFKELQFFTGESMD 171
L++Y+ +V A L+ +Q+E FK NKV K L+ F+ + M+
Sbjct: 1150 LEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEME 1195
>01_06_0026 + 25738960-25739075,25740385-25740733,25740825-25741511
Length = 383
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 243 EKHHDWYLRTIKVSIFHHGNHAITIHRLPSKEL 145
++H W+ R ++ +FH H+I + R+ EL
Sbjct: 349 QRHFLWHARPLRYDLFHMILHSIWLSRVNQIEL 381
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 19 YLKDYMKKLVAKLEEKAPDQVEVFKTXXNKV 111
+LKD+ K+ + L E PD + F+T NK+
Sbjct: 163 FLKDFHKRRLEVLAEAGPDLI-AFETIPNKL 192
>02_05_0172 +
26460884-26461084,26461168-26461391,26461726-26461756,
26462247-26462834
Length = 347
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 142 LQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFK 246
L+ E+ C+G + + + R FDG ++M F+
Sbjct: 305 LRLLQDEAQRCEGRLVLSQKRYFDGKPRSLLMHFE 339
>04_04_0821 - 28349662-28350027
Length = 121
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 231 DWYLRTIKVSIFHHGNHAITIHRLPSKELKFLKPAED 121
D Y + + G A ++H+ P K K KPA D
Sbjct: 3 DAYKKAKPGRLVFKGGEAASLHKPPKKHKKNKKPASD 39
>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
Length = 546
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 243 EKHHDWYLRTIKVSIFHHG 187
EKHH W T++V I HG
Sbjct: 251 EKHHRWLFATVRVKI--HG 267
>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
Length = 546
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 243 EKHHDWYLRTIKVSIFHHG 187
EKHH W T++V I HG
Sbjct: 251 EKHHRWLFATVRVKI--HG 267
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 243 EKHHDWYLRTIKVSIFHHGNHAITIHRL 160
+KH W+ IK IFH H+I R+
Sbjct: 486 QKHFIWHPNPIKYDIFHMILHSIWYSRV 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,406,953
Number of Sequences: 37544
Number of extensions: 98914
Number of successful extensions: 307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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