Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7j21
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 121 1e-28
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 117 2e-27
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 102 4e-23
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 96 5e-21
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 95 1e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 90 2e-19
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 87 2e-18
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 85 9e-18
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 84 2e-17
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 78 1e-15
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 73 3e-14
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 70 4e-13
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 50 2e-07
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 33 0.029
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 27 3.3
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 27 3.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.3
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 4.3
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.3
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 4.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 7.6
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 121 bits (291), Expect = 1e-28
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 370
+++RRL KE +D+R+ + R VD+ N+ W + P + Y G F + FP +
Sbjct: 7 SSSRRLTKEYSDLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLD 65
Query: 371 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 550
YPF+PP I F T+IYHPN D +G VCL I+ + +KP+ K V++ ++ L+ +P P+ P
Sbjct: 66 YPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDP 125
Query: 551 LRAELAEEFLKDRKKFTKNAEEFTKNTVKN 640
L A +AE++ DR F K A ++ + K+
Sbjct: 126 LVASIAEQYRNDRPSFDKIARDYVEQFAKS 155
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 117 bits (281), Expect = 2e-27
Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +R+ +EL D+ + S V + ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
PFKPPK++F T+IYHPNI+ G +CL I+ + W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDIL-RDQWSPALTISKVLLSICSLLTDPNPDDPL 119
Query: 554 RAELAEEFLKDRKKFTKNAEEFTK 625
E+A + DR ++ +A E+T+
Sbjct: 120 VPEIAHVYKTDRSRYELSAREWTR 143
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 102 bits (245), Expect = 4e-23
Identities = 49/145 (33%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +2
Query: 200 TRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYP 376
+RR+ KEL D++Q + +++ +I +G+ P+ PY G F ++I P +YP
Sbjct: 6 SRRIAKELADVQQDKQAGIQVWTIND-DISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 377 FKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
F+PPK++F TKIYHPN+ + G +CL I+ + W P + +L +L+ PEP +P
Sbjct: 65 FRPPKMNFDTKIYHPNVSSQTGAICLDILK-DQWSPVYTMKSALISLQSLLCTPEPSNPQ 123
Query: 554 RAELAEEFLKDRKKFTKNAEEFTKN 628
A++A+ +L++ ++F + A E+T +
Sbjct: 124 DAQVAQVYLQNYQQFVRTAREWTSS 148
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 95.9 bits (228), Expect = 5e-21
Identities = 43/161 (26%), Positives = 90/161 (55%), Gaps = 13/161 (8%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 370
A+ + L+K+L +I+++ + F VD+ +I W+ +I+ P++ Y G F ++FP +
Sbjct: 5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQD 64
Query: 371 YPFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQAL 514
YP PPK+ F T+I+HPN+ G+VC+ I+ + E W P + ++ ++
Sbjct: 65 YPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISV 124
Query: 515 VALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKNTVK 637
+++++ P E P + A+EF ++ ++F K + +++
Sbjct: 125 ISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGA-FRIEINFPAE 370
+ T+RL+ EL + S +SN+L W G I + Y +G F+I ++FPA
Sbjct: 28 SVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPAN 87
Query: 371 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 550
YP+ PP I F + ++HPN+D G +CL I+ + W ++ +L +L+ +P P
Sbjct: 88 YPYSPPTIIFTSPMWHPNVDMSGNICLDILK-DKWSAVYNVQTILLSLQSLLGEPNNASP 146
Query: 551 LRAELAEEFLKD 586
L A+ AE + KD
Sbjct: 147 LNAQAAELWSKD 158
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 90.2 bits (214), Expect = 2e-19
Identities = 39/105 (37%), Positives = 63/105 (60%)
Frame = +2
Query: 311 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATK 490
P Y G F +E+ P EYP PP + F TKIYHPN+D+ G++CL + ++W PA +
Sbjct: 41 PQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLK-KDWSPALQ 99
Query: 491 TDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK 625
V+ ++ AL+ P P+ PL ++A+ + ++ + NA E+TK
Sbjct: 100 IRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTK 144
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/146 (26%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A RRL ++ ++Q V + N++ W +I+ P + P+ G F++ ++F +Y
Sbjct: 5 ARRRLMRDFKRMQQDPPAGVSASPVSD-NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
P KPP + F + ++HPN+ G++CL I+ W P ++ ++ +L+NDP P
Sbjct: 64 PNKPPLVKFVSTMFHPNVYANGELCLDILQ-NRWSPTYDVAAILTSIQSLLNDPNNASPA 122
Query: 554 RAELAEEFLKDRKKFTKNAEEFTKNT 631
AE A+ +++K++ + + +++
Sbjct: 123 NAEAAQLHRENKKEYVRRVRKTVEDS 148
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 85.0 bits (201), Expect = 9e-18
Identities = 48/147 (32%), Positives = 68/147 (46%)
Frame = +2
Query: 206 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 385
R+QK++ D+ S + N+L + I PD Y G F+ I YP P
Sbjct: 27 RIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDP 84
Query: 386 PKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAEL 565
PK+ KIYHPNID +G VCL I+ ++W P + ++ L L P E PL E
Sbjct: 85 PKVKCLNKIYHPNIDIEGNVCLNIL-RQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEA 143
Query: 566 AEEFLKDRKKFTKNAEEFTKNTVKNGL 646
A + KD + F K + NG+
Sbjct: 144 AADLHKDPQGFASRVRTAMKGGLVNGI 170
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 84.2 bits (199), Expect = 2e-17
Identities = 39/159 (24%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A RRL KE ++ ++G +E + TW LI PD P+ G + + FP++Y
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALV 517
P PP + F+ + +HPN+ + G VC+ I+ S+E W P ++++ +++
Sbjct: 66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVM 125
Query: 518 ALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKNTV 634
+++ +P E + + + +DR+++ + + T+
Sbjct: 126 SMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKTL 164
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Frame = +2
Query: 281 NILTWQGLIVPDNPP--YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLP 454
+++ W+ + +P P + G +++ + FP EYP +PPK F ++HPN+ G VCL
Sbjct: 37 DLMNWK-VGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLS 95
Query: 455 IIS-AENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTK 604
I++ E WKPA Q++ + L++DP P + E F KD+ ++ K
Sbjct: 96 ILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEK 146
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +2
Query: 311 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 487
P PY+ G +++ + P+EYP+K P I F +I+HPNIDE G VCL +I+ + W P
Sbjct: 39 PSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVIN-QTWSPMF 97
Query: 488 KTDQVIQA-LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEF 619
+ + L L+ P PL E A L++ + ++
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDY 142
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 69.7 bits (163), Expect = 4e-13
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQ-VDESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 367
++ +RL KE + + ++ V + ++ W+ +I P PY G + ++I+
Sbjct: 3 SSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHE 62
Query: 368 EYPFKPPKISFKTKIYHPNID-EKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 544
YP PP + F+TKI HPNI G+VC+ I+ +W PA A+++L+++ +
Sbjct: 63 GYPISPPSVYFQTKIVHPNISWTNGEVCMDILKT-HWSPAWSLQSACLAIISLLSNYDAS 121
Query: 545 HPLRAELAE 571
PL + A+
Sbjct: 122 SPLNVDAAK 130
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 50.4 bits (115), Expect = 2e-07
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +RL KE ++++ ++ D + NIL W +I P + PY G + + FP +Y
Sbjct: 6 AYKRLMKEYLALQKNPVELV-DAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDY 64
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPE 538
PFKPP I T ++CL ++W P+ ++ LV+ + E
Sbjct: 65 PFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDE 119
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 272 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 445
D+ + W I+ P + + + ++I+ A YP PP ++F ++I P +D E G+V
Sbjct: 34 DDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKV 93
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 436 LFINVRVVNLCFETNFRGFEWVFCW 362
LF+N V +C+ N+ GF + FCW
Sbjct: 41 LFLNYVVDIVCYVKNYNGFSF-FCW 64
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +2
Query: 200 TRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPP--YNKGAFRIEINFPAEY 373
++ + ELN+ S K + + ES++ QG + +NPP N G + F +
Sbjct: 2 SQTINSELNENATSQCKEDLKVSLSESDLRDSQGQLGIENPPKCNNSGNHSDNLGFIEQS 61
Query: 374 PFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVI 505
P+ K P++ D K LPI + + K A + ++
Sbjct: 62 ETVHPE---NEKALTPDLRDTKIHTSLPITTPFSKKRAREAKNIL 103
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -1
Query: 358 VNLNAESTFVVRWVVWNN*TLPC*DVG-LINLYVSERLQARL-----SDVIKFFL*SSRC 197
V NA+ ++ V+ NN T+PC G + + +R Q +L D + + + C
Sbjct: 774 VRKNADQIILLVEVMQNNSTMPCFRAGENTSAQLLQRFQLQLGDKECDDFVDLLIQKANC 833
Query: 196 SHCTKFAKMSQNI 158
S T+ + QNI
Sbjct: 834 SVWTRLYDLFQNI 846
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 278 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQ 442
S++ T + LI P PP K E E F+P + ++ I P +D + +
Sbjct: 566 SSMQTIESLIHPRFPPLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVDSQSE 620
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 395 SFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 505
S + I+H N D+ V A +W+ A KTD V+
Sbjct: 460 SMEAPIFHVNGDDVEAVTFICQLAADWRKAFKTDVVV 496
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 404 TKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVN 529
T + HP+ D + CL +I NW+ + + +A++A +N
Sbjct: 101 TGLEHPSTDVE-IFCLHLIRRANWEKKEIGEPLFEAIMACIN 141
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 411 IFVLKLIFGG--LNGYSAGKLISMRKAPLL*GGLSGTIRPC 295
+ VL+++ G LN +S+ KLI PLL G +R C
Sbjct: 450 LLVLQMLCGAHVLNKFSSLKLIMTHVIPLLPGSYQDLVRRC 490
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 152 LWNILGHFSKFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD 316
LWN+L FSKF A+ + + ++ F + V NI W VPD
Sbjct: 2313 LWNLLNQFSKFLIEIASAN-SNIVYKLSYDVIRHFLKLVVLWKNIYVWTN--VPD 2364
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 215 KELNDIRQSGLKSFRDIQVDESNILTWQGL 304
K+L++ +++ L + I++DE +L WQGL
Sbjct: 50 KQLSESKEAYLDA---IKIDEKAVLAWQGL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,980
Number of Sequences: 5004
Number of extensions: 61360
Number of successful extensions: 182
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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