Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7j21
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 223 9e-59
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 118 4e-27
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 118 4e-27
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 105 3e-23
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 97 1e-20
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 95 4e-20
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 95 4e-20
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 93 2e-19
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 89 2e-18
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 89 4e-18
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 88 6e-18
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 80 1e-15
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 71 1e-12
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 70 1e-12
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 70 1e-12
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 70 2e-12
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 66 2e-11
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 65 5e-11
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 62 5e-10
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 61 6e-10
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 56 2e-08
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 45 4e-05
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 39 0.003
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 37 0.015
AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf (tbp-asso... 35 0.046
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 32 0.43
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 32 0.43
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 32 0.43
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 4.0
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 5.3
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 28 7.0
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 9.2
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 9.2
AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction ... 27 9.2
AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin prote... 27 9.2
AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin prote... 27 9.2
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 223 bits (545), Expect = 9e-59
Identities = 89/145 (61%), Positives = 124/145 (85%)
Frame = +2
Query: 191 MAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAE 370
M+ATRRLQKEL D++ G+K++ +++ +E+N+L W L++PD PYNKGAF++ I FP +
Sbjct: 1 MSATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLIPDKEPYNKGAFKVGITFPVD 60
Query: 371 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 550
YPFKPPK++F+TKIYHPN+DE+G+ CLPI++AENWKPATKT+QV+ AL++L+N+PEP HP
Sbjct: 61 YPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHP 120
Query: 551 LRAELAEEFLKDRKKFTKNAEEFTK 625
+RA++AEEF KD KKF K AEE T+
Sbjct: 121 IRADVAEEFQKDHKKFMKTAEEHTR 145
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 118 bits (284), Expect = 4e-27
Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 554 RAELAEEFLKDRKKFTKNAEEFTK 625
E+A + DR+++ + A E+T+
Sbjct: 120 VPEIARIYKTDRERYNQLAREWTQ 143
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 118 bits (284), Expect = 4e-27
Identities = 55/144 (38%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 554 RAELAEEFLKDRKKFTKNAEEFTK 625
E+A + DR+++ + A E+T+
Sbjct: 120 VPEIARIYKTDRERYNQLAREWTQ 143
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 105 bits (252), Expect = 3e-23
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Frame = +2
Query: 272 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVC 448
DESN + +I PD+ P+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRIC 88
Query: 449 LPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKN 628
L I+ + W PA + V+ ++ AL++ P PE PL ++AE++ + + K A+++T N
Sbjct: 89 LDILK-DKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/141 (30%), Positives = 79/141 (56%), Gaps = 1/141 (0%)
Frame = +2
Query: 206 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 385
R++KE+ D+ ++ + +D + E +Q I+ D Y F + ++ EYPFKP
Sbjct: 17 RIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVLYKNMIFTLTLDVNVEYPFKP 76
Query: 386 PKISFKTKIYHPNIDEKG-QVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAE 562
P + F +YHPN+D ++C P++ ENWKP T + V+ L+ L+N+P+ P+ +
Sbjct: 77 PYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNID 136
Query: 563 LAEEFLKDRKKFTKNAEEFTK 625
A +++ ++ +F K + E K
Sbjct: 137 AAHDYIHNKVEFVKKSTELAK 157
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 95.1 bits (226), Expect = 4e-20
Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Frame = +2
Query: 188 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 364
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 365 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 544
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 545 HPLRAELAEEFLKDRKKFTKNAEEFTKNTVKN 640
P + A+ + ++R+++ K ++ + + N
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQSWLN 151
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 95.1 bits (226), Expect = 4e-20
Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Frame = +2
Query: 188 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 364
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 365 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 544
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 545 HPLRAELAEEFLKDRKKFTKNAEEFTKNTVKN 640
P + A+ + ++R+++ K ++ + + N
Sbjct: 120 SPANSLAAQLYQENRREYEKRVQQIVEQSWLN 151
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 93.1 bits (221), Expect = 2e-19
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 21/177 (11%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQ-GLIVPDNPPYNKGAFRIEINFPAEY 373
A R L EL +++ ++ F I V+E N+ W G+ P Y G F+ I FP+ Y
Sbjct: 11 ALRALTMELKNLQSQPVEGFT-IDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNY 69
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPI------------ISAENWKPATKTDQVIQALV 517
P+ PP + F TK++HPN+ E G +C+ I ++ E W P ++ +++
Sbjct: 70 PYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVI 129
Query: 518 ALVNDPEPEHPLRAELAEEFLKDR--------KKFTKNAEEFTKNTVKNGLQIKYTI 664
+L+N+P P + + + K + K TK EE K K+G+Q+ TI
Sbjct: 130 SLLNEPNTSSPANVDASVMYRKWKEDQDPEYAKIVTKQVEESKKVAQKDGIQVPETI 186
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 89.4 bits (212), Expect = 2e-18
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +RL E ++ + +DE N W+ LI P+ + G F I FP +Y
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISA------------ENWKPATKTDQVIQALV 517
P PPK+ F I+HPNI G+VC+ I+ A E W P ++++ ++V
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 518 ALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKNTV 634
+++ +P E P A+ + +DR +F K A+ + T+
Sbjct: 125 SMLAEPNDESPANVSAAKMWREDRAQFEKIADSLVRKTL 163
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/154 (28%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Frame = +2
Query: 209 LQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKP 385
L+K+L D+R+ + F VD+++I W+ L++ P + Y G F+ ++FP +YP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 386 PKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVN 529
PK+ F ++I+HPNID++G VC+ I+ E W P + ++ ++++++
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 530 DPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKNT 631
DP E P + A+ ++ +F K + + +
Sbjct: 128 DPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 87.8 bits (208), Expect = 6e-18
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVD--ESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 367
A RLQ+E ++ + S I ++ N+ +G I P + PY G F ++I P
Sbjct: 5 AFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPD 64
Query: 368 EYPFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 544
+YPF PP + F TKI+HPN+ + G +CL I+ + W + V+ ++ AL+ PEP+
Sbjct: 65 QYPFSPPNVKFSTKIWHPNVSSQTGVICLDILK-DQWAASLTLRTVLLSIQALMCTPEPK 123
Query: 545 HPLRAELAEEFLKDRKKFTKNAE----EFTKNTVKN 640
P A +A+++++ F AE +F K VKN
Sbjct: 124 DPQDAVVAKQYMEKPAVFKATAEYWTTKFAKGAVKN 159
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 80.2 bits (189), Expect = 1e-15
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 19/168 (11%)
Frame = +2
Query: 176 SKFCTMAATRRLQKELN--DIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFR 346
S TR+ ++ N DI ++G+ +++ E+N++ +G I P+ PY G F
Sbjct: 16 SNLALARVTRKCKEVANASDITEAGIH----VEIKENNLMDIKGFIKGPEGTPYAGGTFE 71
Query: 347 IEINFPAEYPFKPPKIS---------------FKTKIYHPNI-DEKGQVCLPIISAENWK 478
I+++ P YPF+PPK++ F T+I+HPNI + G +CL I+ + W
Sbjct: 72 IKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILK-DKWT 130
Query: 479 PATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFT 622
+ V+ +L A++ PEP P A +A++F+ + FT A +T
Sbjct: 131 ASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFTATAVYWT 178
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Frame = +2
Query: 311 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 487
P + Y G +RI ++ P +YPFK P I F KI+HPNIDE G VCL +I+ + W
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVIN-QAWTALY 100
Query: 488 KTDQVIQA-LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEF 619
+ L L+ P PL E A ++ +++ + E+
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLYIHKPEEYRRTCREY 145
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +2
Query: 281 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 457
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 458 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEE 616
+ ++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +2
Query: 281 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 457
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 458 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEE 616
+ ++WKP+ Q++ + L+N P E P +AE + + ++R ++ K ++
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKK 150
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 69.7 bits (163), Expect = 2e-12
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 305 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAEN---- 472
+ P Y G FR +I P EY PP + TK++HPNI+E G +CL I+ +
Sbjct: 65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQY 124
Query: 473 -WKPATKTDQVIQALVALVND-PEPEHPLRAELAEEFLKDRKKFTKNAEEF 619
W+P V+ LV+L ND + L + A+ + ++R+ F E+
Sbjct: 125 GWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREY 175
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 66.5 bits (155), Expect = 2e-11
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +2
Query: 296 QGLIVP-DNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAE 469
QG+I + PY G F ++I YPFK P + F TKI+HP++ G +CL +
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 470 NWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTK 625
W + +V+ + + +++ + P+ E+ E+ +R+ F K AE +TK
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNREVFEKTAEFWTK 493
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 64.9 bits (151), Expect = 5e-11
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQVDESNILT-WQ-GLIVPDNPPYNKGAFRIEINFPA 367
AATRRL KEL ++ + SN L W+ G++ + Y F ++ F
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 368 EYPFKPPKISF--KTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALV-NDPE 538
+YPF P++ F +T HP+I G +CL I+S ++W PA V ++++++ + E
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILS-DDWTPALSVQSVCLSILSMLSSSKE 122
Query: 539 PEHPL 553
+HP+
Sbjct: 123 KKHPI 127
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/173 (22%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Frame = +2
Query: 119 QLIDLNFKKE----YLWNILGHFSKFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNI 286
Q +DL++ +E L+++ + +F T + +K D R + + I + ++I
Sbjct: 8 QYVDLSYFRETADALLFDVETNSREFTNEINTVKEEKAKWDERTPQGYTAKPISFEGADI 67
Query: 287 -LTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPII 460
+W + P P+ G + + +NF ++P PP FKT ++HPN+D +G + L ++
Sbjct: 68 WCSWICTVPGPRGSPWEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKML 126
Query: 461 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEF 619
E+W T ++++ + L+ P+ E E+ R+ + A +
Sbjct: 127 EQEHWSSETSLKKLLREISNLLATPDLTQAANIEAWMEYENQRENYEAKARAY 179
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 61.3 bits (142), Expect = 6e-10
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Frame = +2
Query: 200 TRRLQKELNDIRQS-GLKSFRDIQV--DESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 367
T+R+ KEL I + L + I V DE + + LI PD+ PY G F +I FP
Sbjct: 411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPT 470
Query: 368 EYPFKPPKISFKTK-----IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVND 532
YPF PPK +F T ++PN+ G++CL I+ +P K + + LV+
Sbjct: 471 GYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530
Query: 533 PE 538
E
Sbjct: 531 QE 532
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Frame = +2
Query: 197 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 373
A +RL+K+ + + + + + E+NIL W+ +I+ PY G + ++ FP ++
Sbjct: 9 ALQRLKKDYQRLLKEPVPFMKAAPL-ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDF 67
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPEP 541
PFKPP I T + ++CL I + W PA +I L++ +ND +P
Sbjct: 68 PFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 45.2 bits (102), Expect = 4e-05
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 194 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD-NPPYNKGAFRIEINFPAE 370
A RRL KE ++RQ Q E N+ W I + G + I FPA+
Sbjct: 10 AGVRRLMKEAMELRQP--TEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPAD 67
Query: 371 YPFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALV 526
YP KPP + T +++K VCL I E W P+ + AL+ +
Sbjct: 68 YPMKPPNLILLTPNGRFELNKK--VCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 311 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 445
P + PY G F +++ FP YP P+I F+T I++ ++ GQV
Sbjct: 38 PADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 37.9 bits (84), Expect = 0.007
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Frame = +2
Query: 278 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP--PKISF-KTKIYHPNIDEKG-QV 445
+N W G+I + G FR I+ P E+P P++ F ++ ++HP I K ++
Sbjct: 46 NNKFLWFGVIFVRKGIFGGGIFRFNIHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKEL 105
Query: 446 CLPIISAENWKPATKTDQVIQALVALVN-----DPEPEHPLRAELAEEFLKDRKKFTKNA 610
CL E WK + + + LV L D + + + E + + + R KF + A
Sbjct: 106 CLNRSFPEGWK--KEKHSLRRVLVVLQRSFYSYDVDTDKCINPEASVLYKEHRDKFREIA 163
Query: 611 EE 616
+E
Sbjct: 164 KE 165
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +2
Query: 263 IQVDESNILT-WQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK 436
++ D LT W I+ P PY + ++I YP +PP + F TK++ +++
Sbjct: 30 LEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQS 89
Query: 437 GQVC--LPIISAENWKPATKTDQVIQ 508
V + + NW + V++
Sbjct: 90 NGVIDKRNLTTLRNWSNSYMIKTVLE 115
>AF063007-6|AAC16427.2| 523|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 4
protein.
Length = 523
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 461 SAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKN 628
+A + K TK + ++ L+ L N+ +PE P +A +E ++ AEEFT+N
Sbjct: 97 AASDDKNVTKCVRFLKTLINLSNNDDPEMPDKAARVKELIRGVIYLETTAEEFTRN 152
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 263 IQVDESNILTWQGLIV-PDNPPYNKGAFRIEINF-PAEYPFKPPKISFKTKIYHPNIDEK 436
+++DE+ L + +I P Y G F +IN P + P++ F T I+HPN+ +
Sbjct: 54 MRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKY 113
Query: 437 G 439
G
Sbjct: 114 G 114
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 320 PPYNKGAFRIEINFPAEYPFKPPKISFK 403
P YNKG + ++++ PA Y F+P I K
Sbjct: 67 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 94
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 320 PPYNKGAFRIEINFPAEYPFKPPKISFK 403
P YNKG + ++++ PA Y F+P I K
Sbjct: 65 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 92
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 29.5 bits (63), Expect = 2.3
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +2
Query: 188 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 322
++ AT RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITATDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 323 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 481
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 482 ATKTDQVIQALVA 520
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 320 PPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPAT 487
PPY + + + + P ++PF PP I+ KT +K L + WKP+T
Sbjct: 46 PPYTE--YIVTVAIPPKFPFSPPAITCKT--------DKNMKFL-FLEENQWKPST 90
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +2
Query: 305 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPA 484
+ ++PP A + P P PPK+ K H E+ ++ + KP
Sbjct: 547 LTEEDPPEESAAAAAPEDVPDAAPEDPPKVILKPTPPHRMTQEEKNAHFARLTTDKEKPT 606
Query: 485 TKTDQVIQ-ALVALVNDPEPEHPLRAELAEEFL 580
+ T + Q A V P P LR +E L
Sbjct: 607 SSTSILPQDAAPPHVPPPPPPLVLRPHHQDETL 639
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 28.3 bits (60), Expect = 5.3
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Frame = +2
Query: 320 PPYNK--GAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKT 493
PP NK G ++ P P +P K+ + K P + + + P + + A K
Sbjct: 367 PPKNKESGTPPLKEKTPEPIPEEPKKVEEEVK--KPEVPKNEE---PKMEEPVKEEAPKV 421
Query: 494 DQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKNTVKNGL 646
++ + V +V DP+ E PL + ++ ++ K ++ E T T K+G+
Sbjct: 422 EEKKEE-VKMVEDPKVESPLEVKKMKKRIQINVKRYPDSGELTILTEKDGM 471
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 27.9 bits (59), Expect = 7.0
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +2
Query: 188 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 322
++ A+ RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITASDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 323 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 481
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 482 ATKTDQVIQALVA 520
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/85 (20%), Positives = 34/85 (40%)
Frame = +2
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
PF+PP + P +D G V P+ + E A + N P P+
Sbjct: 266 PFRPPMPMLSPHLMSPPLDRDGGVTSPVSNGEPINTAI-------PFAPIYNPPTAPRPV 318
Query: 554 RAELAEEFLKDRKKFTKNAEEFTKN 628
+ +E+++ + ++ + E K+
Sbjct: 319 TDDTLKEYVRKQIEYYFSEENLQKD 343
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/85 (20%), Positives = 34/85 (40%)
Frame = +2
Query: 374 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 553
PF+PP + P +D G V P+ + E A + N P P+
Sbjct: 463 PFRPPMPMLSPHLMSPPLDRDGGVTSPVSNGEPINTAI-------PFAPIYNPPTAPRPV 515
Query: 554 RAELAEEFLKDRKKFTKNAEEFTKN 628
+ +E+++ + ++ + E K+
Sbjct: 516 TDDTLKEYVRKQIEYYFSEENLQKD 540
>AF303262-1|AAG50220.1| 362|Caenorhabditis elegans gap junction
innexin protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 645 RPFFTVFLVNSSAFFV 598
R +FTVFL+ SSAFF+
Sbjct: 25 RYYFTVFLLTSSAFFI 40
>AF067219-9|AAX88822.1| 266|Caenorhabditis elegans Innexin protein
17, isoform b protein.
Length = 266
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 645 RPFFTVFLVNSSAFFV 598
R +FTVFL+ SSAFF+
Sbjct: 25 RYYFTVFLLTSSAFFI 40
>AF067219-8|AAC17025.1| 362|Caenorhabditis elegans Innexin protein
17, isoform a protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 645 RPFFTVFLVNSSAFFV 598
R +FTVFL+ SSAFF+
Sbjct: 25 RYYFTVFLLTSSAFFI 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,680
Number of Sequences: 27780
Number of extensions: 339810
Number of successful extensions: 896
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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