Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7j18
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.26
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.60
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.4
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 1.8
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.6
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 5.6
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 7.3
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 7.3
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 24 9.7
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.26
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 361 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 245
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.60
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 221 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 325
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 116 VVENADSADPFFAQPTVGNGYEPIDNRPYIVNP 214
+++ +SAD +A P + +G P+ + IVNP
Sbjct: 1251 LIQPCESADKPYALPLLDSGMVPVSTQLAIVNP 1283
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 215 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 313
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 247 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 354
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 5.6
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +2
Query: 95 NAQDPVKVVENADSADPFFAQPTV--GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGA 268
N PV +A + P + N Y PI VNP Y P+G G+
Sbjct: 955 NPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHG--------GS 1006
Query: 269 YYVDPPQGRPYFKPTPFP 322
V PP+ +P + P P
Sbjct: 1007 QIVPPPK-QPANRVVPLP 1023
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 218 KDYNPNGNGYEPIDNGAYYVDPPQGRP 298
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 189 SIGS*PFPTVGWAKNGS-AESAFSTTL 112
S G PF T+GW K+ S E+ + TTL
Sbjct: 582 SSGLWPFSTLGWPKDTSDYENFYPTTL 608
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 459 FFXKHYNMFIYLFR*HKFI*NFEI 388
FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 185 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 271
+++ PY+ N D+N NGN P+ +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,326
Number of Sequences: 5004
Number of extensions: 39672
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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