Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j17
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    26   2.5  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   5.7  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    24   9.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    24   9.9  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   9.9  

>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 105 ESKLPHERVIKRYLIV 58
           E KLPH+++ +RYL+V
Sbjct: 307 EGKLPHQQIQQRYLLV 322


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 165 NLPAAKLGSSAAERLVFSSYRP 230
           N+P A+LGSSA+++    ++ P
Sbjct: 351 NMPTAELGSSASQKYDIEAWMP 372


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 199 AALLPSLAA-GRLQ*KTLAAGSVCISSASNSSRIKTSA*ACNQTLSHSFV 53
           AA+LP L   GR        G VC+S+A+ S +  +      Q LSH  V
Sbjct: 154 AAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTV 203


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 153 HWQPVQCVSALLVIPVESKLPHERV 79
           H   V+ VSAL ++P+  KL  E++
Sbjct: 530 HDDDVRAVSALTLLPIADKLVQEKL 554


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 267 SYTIRNYPLAPRSVDNC*KPTALLRCYQV*LPEGCNKKHWQPVQCVS 127
           SY   +Y ++P S ++     A    YQ     G +K HW+P   VS
Sbjct: 115 SYQAMSYSVSPTSTNSS---VATSLNYQSSRETGISKDHWKPDSDVS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,398
Number of Sequences: 5004
Number of extensions: 25665
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)