Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j17
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0670 + 20562188-20562923,20564288-20564826,20564967-205654...    27   7.4  
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173...    27   7.4  

>07_03_0670 +
           20562188-20562923,20564288-20564826,20564967-20565458,
           20566803-20567018
          Length = 660

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 174 AAKLGSSAAERLVFSSYRPNEEQEDNY-VLYSC 269
           AA  GS    RL+  +YR +EE+E+   VL SC
Sbjct: 196 AAAAGSLGMVRLLTKTYRNDEEEEEELPVLCSC 228


>02_01_0262 -
           1734447-1735090,1735219-1735367,1735458-1735633,
           1735719-1735853,1737039-1737120,1737307-1737461
          Length = 446

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 207 TALLRCYQV*LPEGCNKKHWQPVQCVSALLVIPVE-SKLPHERVI 76
           TA L C++  L +   K  WQ V  V   L   +E +  P +RVI
Sbjct: 59  TATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVI 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,870,208
Number of Sequences: 37544
Number of extensions: 145478
Number of successful extensions: 287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)