Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7j10
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 40 2e-04
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 34 0.016
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 33 0.050
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.086
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 29 0.46
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.46
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 28 1.1
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 1.9
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 4.3
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 26 4.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 4.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 5.7
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 5.7
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.5
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 25 7.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 25 7.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.9
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 40.3 bits (90), Expect = 2e-04
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Frame = +3
Query: 258 IAFVFLSLLLDLFAFTMILPLLP-SLMDYYSREENQENSLYSTLLQAVRSFQKLTGAPDR 434
I + ++L DLF + +I P+LP SL+D ++ S+ STLL +P
Sbjct: 17 IGTIAIALFTDLFLYGIITPILPFSLVDRVGISPDRVQSVISTLLAVYAVANIAASSPIG 76
Query: 435 FVSVLFGGALGSMYSFLQFLTSPIVGSLSDAYGRKPMLLIC--LTGIAASHALWSLAETF 608
F++ F M L FLTS +L PML++ L G++A+ +W++
Sbjct: 77 FLADKFLTRKVPMLIGLIFLTS--ATALLTFGNSVPMLIVARVLQGLSAA-VVWTVGLAL 133
Query: 609 LIFVV 623
L+ VV
Sbjct: 134 LVDVV 138
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +3
Query: 423 APDRFVSVLFGGALGSMYSFLQFLTSPIVGSLSDAY-GRKPMLLICLTGIAASHALWSLA 599
+PDR SV+ L ++Y+ S +G L+D + RK +LI L + ++ AL +
Sbjct: 49 SPDRVQSVI--STLLAVYAVANIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALLTFG 106
Query: 600 ETFLIFVVARFIGGLSKANV 659
+ + +VAR + GLS A V
Sbjct: 107 NSVPMLIVARVLQGLSAAVV 126
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 462 LGSMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGG 641
+GS Y P VG + GRK +L IC+ AL ++ + +V R I G
Sbjct: 136 IGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQG 195
Query: 642 LSKANV 659
L +
Sbjct: 196 LGGGGI 201
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 32.7 bits (71), Expect = 0.050
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 462 LGSMYSFLQFLTSPIVGS-LSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIG 638
LG+ + + P++ S LS+ YGR+P+ + T A +L+ +FVV RF
Sbjct: 79 LGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFS 138
Query: 639 G 641
G
Sbjct: 139 G 139
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 31.9 bits (69), Expect = 0.086
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 459 ALGSMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETF 608
A GS+ +FL ++ G++ D YGR+ +L I ++ + LW L +++
Sbjct: 191 AFGSLAAFLGLFSTAYYGTMGDIYGRRLVLFITVSFLLLGD-LWLLYQSY 239
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 504 IVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLSKANVSL 665
I G+L+D +GRKP++ I I + A +V RF+ G SL
Sbjct: 146 IAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASL 199
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.5 bits (63), Expect = 0.46
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 375 YSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLT-SPIVGSLSDAYGRKPMLL 551
Y ++ VR F K P+ + + + S Y FLQF+T SP+ G+++ + G +L
Sbjct: 359 YGLMMNLVRDFSKNLENPNFYYEREY---VDSFYDFLQFMTSSPLGGNMACSAGLTSLLG 415
Query: 552 ICLTGIAASHALWSLAETFLIFVVARFIGGLSKA 653
L+ + A + +A + I ++ I G S A
Sbjct: 416 YHLS-VKTPQATYVVARS--IVMLDHLIDGYSMA 446
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 468 SMYSFLQFLTSPIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGLS 647
S SF +++ G L+D GRK +LL + + + + VV RFI G
Sbjct: 127 SATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYG 186
Query: 648 KANVSL 665
SL
Sbjct: 187 IGLTSL 192
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Frame = +3
Query: 501 PIVGSLSDAYGRKPMLL--ICLTGI-----AASHALWSLAETFLIFVVARFIGGLSKANV 659
P+ G D YGRK LL C+ GI S +LW L +A GG + V
Sbjct: 142 PLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAA---RAIAGIGGGGMNSTV 198
Query: 660 SLCM 671
S+ M
Sbjct: 199 SILM 202
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 631 NRATTNIRNVSAKLHSACDAAIPVRHISSIGFLPYASERLPT 506
N + ++ K S D ++P+R +S++ PY SE LP+
Sbjct: 121 NGSKNGAKSAVKKEESDTDDSVPLRAVSTVSLTPYKSE-LPS 161
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 489 FLTSPIVGS-LSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGG 641
++ PIV + LS+ GRK LLI + G + ++A+ ++ RF G
Sbjct: 183 YIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSG 234
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 345 SREENQENSLYSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLTSPIVGSLSD 524
S+ E + N + T++ + K G P +V+ FG LG+ + + + IV D
Sbjct: 24 SKIEGKGNGI-KTVIPNMSDIAKALGRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHD 82
Query: 525 A 527
A
Sbjct: 83 A 83
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 375 YSTLLQAVRSFQKLTGAPDRFVSVLFGGALGSMYSFLQFLTSPIVGSLS 521
+ LLQA +F+K+ + + G G+ F F TS G+LS
Sbjct: 1112 FPELLQAESTFKKIQSVSGYNIDAMVAGVDGAYDEFCDFQTSLKDGALS 1160
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 56 FLQCRVCIHLKIQKPVGTCSI*PWII 133
FL + I + +++PVG SI WII
Sbjct: 519 FLSIPLSIQVDVEEPVGPTSILQWII 544
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 273 LSLLLDLFAFTMILPLLPSLMDYYSREENQENSLYSTLLQAVRSFQKLTGAPD 431
LSL L+ + +++P + + DY REE+ SL+ L S++ P+
Sbjct: 385 LSLALNQYMEDLLVPFI-EVDDYLKREEHSLRSLFRLSLYKYTSYKIRLETPE 436
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 223 IKMRILEQMLKPSHLCFYRYY 285
++ ILE ML P H CF+ Y
Sbjct: 58 VRQVILELMLAPPHTCFHLEY 78
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +3
Query: 297 AFTMILPLLPSLMDYYSREENQEN--SLYSTLLQAVRSFQKLTGAPDRFVSVLFGGALGS 470
AFT++ +L L DY E EN + ++ + + + L P F G +
Sbjct: 592 AFTLLRDILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSLFADGKLRGKISL 651
Query: 471 MYSFLQFLTSPIVGSLSDAYGRKPMLLICL 560
+ + +++ + + + + M+ C+
Sbjct: 652 VKTLVEYYDTAVFAIMQNPGNDWDMIRACI 681
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +3
Query: 501 PIVGSLSDAYGRKPMLLICLTGIAASHALWSLAETFLIFVVARFIGGL 644
P+ G LSD +GR+P ++ ++ + +AR + G+
Sbjct: 84 PLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGI 131
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 279 LLLDLFAFTMILPLLPSLMDYYSREENQENSL 374
LLLDL++F L LP L YS ++ N L
Sbjct: 603 LLLDLYSFKNALLKLPDLKQDYSITDSYINHL 634
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 306 MILPLLPSLMDYYSREENQENSLYSTLLQAVRSFQKLTGA 425
+I+ LL + S E +EN LY +LL + FQK T A
Sbjct: 1382 VIVGLLKGIQCQQSDESIREN-LYGSLLSILTVFQKHTSA 1420
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,067
Number of Sequences: 5004
Number of extensions: 62490
Number of successful extensions: 179
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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