Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j05
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   4.1  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   4.1  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    24   5.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    24   7.1  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    23   9.4  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 287 VWSISII-FKENTICILYIGRHI 222
           VW   ++  +E+  C+LYI RH+
Sbjct: 15  VWDSHVVDLQEDGTCLLYIDRHL 37


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 297 TVLSLEYQHHFQREHHLHPLHWAPYWSVISRYTSXYLLTV*KKYTI 160
           +++S+     F R HHL+ LHW    S +  Y + ++L +   Y++
Sbjct: 336 SIISIIQTFIFDR-HHLYTLHWT---SEMGGYLAGFILVMFLLYSL 377


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 224 YGAQCKGCKWCSL*K*C*YSRLRTVQ 301
           Y  +CK CK+C   K     R+RT Q
Sbjct: 98  YTPECKTCKFCKSGKTNLCGRIRTTQ 123


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 130  NSNTEAKYVNIVLFXIKRKN--RVTVHQAHSL 41
            +S T   Y+N+ L+   +KN  +  +H  H+L
Sbjct: 1022 SSETSLAYMNLSLYEFSQKNEMQAVMHMQHAL 1053


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -2

Query: 258 EHHLHPL--HWAPYWSVI 211
           +H  HP   HWA  WS++
Sbjct: 67  DHPAHPQNWHWAKRWSIV 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,214,171
Number of Sequences: 5004
Number of extensions: 19840
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)