Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j05
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0177 + 1406725-1406920,1407444-1408267                           27   3.8  
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957...    27   3.8  
01_05_0455 + 22387512-22387629,22388344-22388852                       27   5.0  
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746...    26   6.6  
04_01_0053 + 551027-553024                                             26   8.7  
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337...    26   8.7  

>11_01_0177 + 1406725-1406920,1407444-1408267
          Length = 339

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 244 MQMVFSLKMMLILQT*DCPAHLY 312
           M  +FSLK+  I  T D P HLY
Sbjct: 94  MMQIFSLKLSNITATVDGPVHLY 116


>08_02_0582 +
           18993816-18993890,18994050-18994446,18995645-18995748,
           18995863-18996004,18996118-18996237,18996341-18996465,
           18996903-18997061,18997161-18997323,18997420-18997545,
           18997628-18997711,18997761-18998173,18998199-18998273,
           18998463-18998663,18998862-18998971,18999072-18999156,
           18999365-18999493,18999596-18999701,18999825-18999913,
           19000064-19000366
          Length = 1001

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 321 RLAVQVCWTVLSLEYQHHFQREHHLHPLHWAPYWSVISRY 202
           +L + V  T L  E QH+ +    +H L   PYW +   Y
Sbjct: 370 QLLLPVMLTYLVYEKQHNLRLMMKMHGLKDGPYWMISYAY 409


>01_05_0455 + 22387512-22387629,22388344-22388852
          Length = 208

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 270 HFQREHHLHPLHWAP 226
           H+  +HH+HP H AP
Sbjct: 171 HWPSDHHIHPHHGAP 185


>05_05_0219 +
           23371561-23371680,23371799-23372207,23374520-23374635,
           23375385-23375855
          Length = 371

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 108 YLASVLLFTNXRIDXICE*CIFFKRLINXYWYSVK*QTNMAPNVKDANGVLFENDADTPD 287
           Y AS L+FT   +  +C  C F +R  +   Y    Q  M     +++GV  EN   T D
Sbjct: 266 YGASFLVFTVVLVGVVCACCKFARRRASGVPYQ---QLEMGDQAPNSSGV--ENTTSTVD 320


>04_01_0053 + 551027-553024
          Length = 665

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 292 PKSGVSASFSKRTPF-ASFTLGAILVCYFTL 203
           P SG++AS SK  PF   FT   ++  +F++
Sbjct: 274 PDSGIAASKSKNKPFETGFTTVIVVFSFFSV 304


>03_02_0755 +
           10932897-10933010,10933446-10933577,10933666-10933750,
           10934668-10934831,10934911-10935357
          Length = 313

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 246 HPLHWAPYWSV 214
           HP HW P WSV
Sbjct: 101 HPEHWQPSWSV 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,185,056
Number of Sequences: 37544
Number of extensions: 105984
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)