Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7j05
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 248 CILYIGRHIGLL 213
           C L +GRH+G L
Sbjct: 216 CTLILGRHLGFL 227


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 93  NTIFTYLASVLLFTNXRIDXICE*CIFFKRLI 188
           + + TY ASV+ +    +  +   CIF  RLI
Sbjct: 150 HAVDTYAASVVGYLLYSLGQVFMLCIFGNRLI 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 288 SLEYQHHFQREHH 250
           +L+  HH Q  HH
Sbjct: 137 TLQRHHHLQNHHH 149



 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 297 TVLSLEYQHHFQREHHLHPLH 235
           T   L  Q   QR HHL   H
Sbjct: 128 TATGLIKQETLQRHHHLQNHH 148


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 65  HCSPSTLADKLTLTLTCP 12
           H    T + +LT+T +CP
Sbjct: 122 HSGSITRSIRLTITASCP 139


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 65  HCSPSTLADKLTLTLTCP 12
           H    T + +LT+T +CP
Sbjct: 122 HSGSITRSIRLTITASCP 139


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 65  HCSPSTLADKLTLTLTCP 12
           H    T + +LT+T +CP
Sbjct: 61  HSGSITRSIRLTITASCP 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,994
Number of Sequences: 438
Number of extensions: 1306
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)