Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i15
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.5  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    25   9.9  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.9  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 592 RNEQKMDAKKRTSXHGLR 645
           RNE K DAKKR + + L+
Sbjct: 499 RNESKQDAKKREALYALK 516


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 152 IDLNPNEKADFNITVP-KDASWVEQEDHVVNEL 247
           + L PN    FNI +P + A+ ++Q + V+  L
Sbjct: 76  VSLTPNPVISFNIKIPSRTANAIQQSNRVIVHL 108


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 500 VHQLTKSLGAKDSGLPENSL 559
           V+ LTKS  +K+ G+ +NSL
Sbjct: 41  VNDLTKSSSSKEEGIADNSL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,468
Number of Sequences: 5004
Number of extensions: 45687
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)