Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i15
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0227 - 23762738-23763268                                         31   0.83 
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426     29   2.5  
08_01_0433 + 3794440-3794948,3795696-3796707                           29   2.5  
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900...    29   3.3  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    28   5.9  

>04_04_0227 - 23762738-23763268
          Length = 176

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 436 WGKSSLRSHPRNDRLWNGKGRCTPTHKISG 525
           WG++ LR + R  R   G  R  P H I+G
Sbjct: 120 WGEAELRGYARRQRAQRGPMRARPPHSIAG 149


>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
          Length = 284

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 464 PGMIGYGMAKAAVHQLTK--SLGAKDSGLPENSLAVAIMPVTLDTE-MNRKWM 613
           PG  GY  +K+A+H  TK  +L     G+  NS+A  I    +    + +KW+
Sbjct: 175 PGSTGYAASKSAMHYATKLMALELGAYGIRVNSIAPGIFKSEITAPLLQKKWL 227


>08_01_0433 + 3794440-3794948,3795696-3796707
          Length = 506

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 424 VGFNWGKSSLRSHPRNDRLWNGKGRCTPTHKISGC*GLWSARE 552
           VG  WG+   R H      W   GRC P  + S C G  + RE
Sbjct: 6   VGTGWGRIRRRRHALRRACWRRGGRCEPGWR-SRCEGDSARRE 47


>06_03_1249 -
           28688997-28689248,28689469-28689533,28690016-28690093,
           28691480-28691824,28693314-28693510,28695601-28696601
          Length = 645

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 581 TLDTEMNRKWMPKSGLXYMDSADLCG 658
           TL   +NR W P  G   +D  D+CG
Sbjct: 468 TLLRALNRLWEPAPGAVLLDGVDICG 493


>03_01_0423 +
           3240224-3240394,3241464-3241628,3242322-3242339,
           3242494-3242836,3244138-3248540,3248928-3249107,
           3249108-3250892,3251055-3252173
          Length = 2727

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 421 TTSV*VLSCQCCCNRGTP 368
           TT+  V +C CCCN G P
Sbjct: 38  TTTTTVSTCPCCCNGGGP 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,501
Number of Sequences: 37544
Number of extensions: 308040
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)