Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i15
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...   190   8e-49
Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score =  190 bits (463), Expect = 8e-49
 Identities = 94/190 (49%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
 Frame = +2

Query: 56  MATGXIVVYGGRGALGAACVNHFKSFNYWVANIDLNPNEKADFNITVPKDASWVEQEDHV 235
           M++G ++VYGG+GALG+A +  FK   Y V NIDL+ N++AD NI V  + +W EQE  +
Sbjct: 1   MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSI 60

Query: 236 VNELGNALQGQKVNAIICVXXXXXXXXXX-KDLSKQADLMWRQSVWSSSIAATLAAKYXX 412
           + +  ++LQG +V+ + CV           KD  K ADLM +QSVWSS+IAA LA  +  
Sbjct: 61  LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLK 120

Query: 413 XXXXXXXXXXXXXXXXXPGMIGYGMAKAAVHQLTKSLGAKDSGLPENSLAVAIMPVTLDT 592
                            P MIGYGMAKAAVH LT SL AKDSGLP+NS  + IMPVTLDT
Sbjct: 121 PGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDT 180

Query: 593 EMNRKWMPKS 622
            MNRKWMP +
Sbjct: 181 PMNRKWMPNA 190


>Z72502-4|CAA96589.1|  750|Caenorhabditis elegans Hypothetical
           protein C08B6.7 protein.
          Length = 750

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 199 GDSNVKIGFFVGIQINVSDPIIKRFKMVHAGSTQCPTTTVHDD 71
           GDSN+ +  +V   + V D  I      + GS+Q P  T+H +
Sbjct: 237 GDSNIFLASYVSGNLYVYDQRISAASSNNNGSSQPPPWTIHKE 279


>Z74034-3|CAF31476.1|  322|Caenorhabditis elegans Hypothetical
           protein F43A11.6 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = -1

Query: 658 ATKVSGVHVXKSAFWHPFSVHFCIQCNRHYSYS**ILWQTRVLSTQRFCEL----VYSGL 491
           AT V      +S FW P+     I CN  Y     I +    ++  RFC L    VY  L
Sbjct: 75  ATFVPITLTGQSQFWKPYETVVIISCNNIYMV---IQYSGVFIAVNRFCALFLPIVYKKL 131

Query: 490 CH 485
            H
Sbjct: 132 FH 133


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 592 CIQCNRHYSYS**ILWQTRVLS-TQRFCELVYSGLCHSIADH 470
           C +CN+ + ++   +WQ +V+   Q  C    S +C S  D+
Sbjct: 292 CQKCNQPFFWNLQAMWQRKVVGLRQHHCRTCGSAVCGSCCDN 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,817,436
Number of Sequences: 27780
Number of extensions: 261153
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)