Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i13
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   7.3  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   9.7  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 65   QKSHYTRISVTMAPGVIQNSETILTDSLEVITATHNGGLINELM 196
            +  HY        PGV+QN +T L  S E +++     L++ELM
Sbjct: 1520 ESEHYYLELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDELM 1563


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 362 ELLYDRLYDTTCPRVPTLCNERSCLGSL 445
           EL YD  +     ++P LC   +C G L
Sbjct: 892 ELTYDYKFPEEADKIPCLCGAPTCRGYL 919


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -3

Query: 220 RFVYIRFNHQFVNKTPIMRR----GNNFEGVGQYC 128
           RF   RFN QFV + P+  R     N  E +  +C
Sbjct: 585 RFKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,118
Number of Sequences: 5004
Number of extensions: 49502
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)