Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i13
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0169 - 9123684-9124823,9125408-9125594,9126379-9126476,912...    31   1.1  
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191...    29   2.5  
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...    29   4.3  
12_01_0099 + 767474-767514,767622-767751                               28   7.6  
02_03_0264 + 17059279-17059638,17060226-17060260,17060307-170603...    28   7.6  

>05_03_0169 -
           9123684-9124823,9125408-9125594,9126379-9126476,
           9127124-9127182,9128748-9129081
          Length = 605

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 225 GHVLFTLDSTISSLIR--PPLCVAVITSRESVNIVSEF*MTPGAIV 94
           G  LFTL S + ++ +  PP+C+  + S + V +V  F  + G  V
Sbjct: 557 GEGLFTLPSALLNMFKVLPPMCMKFLPSGQEVEVVDSFLNSSGGTV 602


>02_01_0285 -
           1913425-1914065,1914094-1914177,1914249-1915140,
           1915205-1915249,1915335-1915870,1915987-1916041
          Length = 750

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/56 (39%), Positives = 25/56 (44%)
 Frame = -3

Query: 628 CCG*LVCASRSYFLLYDFPASFMSWSIGPPYRSEVLA*KVLCVIKHLLRVSGHVAS 461
           C G    A  SY L+YD   S     + P   S  LA   L     LLRVSG VA+
Sbjct: 136 CYGSGEYARISYALIYDIQGSLALPILDPDDASSPLAVLELVTTAPLLRVSGEVAN 191


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 134 LTDSLEVITATHNGGLINELMVESNVNKTCPVDL 235
           ++DS  ++T  H+  L+N++ VE  +    PVD+
Sbjct: 652 ISDSTMIVTTVHDKQLVNDIPVEKLLVHDVPVDI 685


>12_01_0099 + 767474-767514,767622-767751
          Length = 56

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 353 ESRELLYDRLYDT-TCPRVPTLCNER 427
           + R++ + RL DT T P+VP  CN R
Sbjct: 27  KKRDVAHSRLSDTPTTPKVPNRCNSR 52


>02_03_0264 +
           17059279-17059638,17060226-17060260,17060307-17060385,
           17060580-17061123,17061328-17061404
          Length = 364

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 398 PRVPTLCNERSCLGSLMAIPGRGDV 472
           P++P  CN RSC  SL  +P  GD+
Sbjct: 17  PQIPNPCNFRSC--SLTTVPPAGDL 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,400
Number of Sequences: 37544
Number of extensions: 340956
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)