Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i06
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    27   2.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.9  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.9  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   5.1  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   8.9  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   8.9  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    25   8.9  

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 340 NNSSALWILNLEDNSIKNVYLDRELPLELSPKRNKTDNEIQKLVVNNFSC-LYLTK 504
           NN   L + +L+   +K      ++  +LS K  +++NEIQ L+  NF+   YL K
Sbjct: 11  NNEDKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSYLVK 66


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 364  LNLEDNSIKNVYLDRELPLELSPKRNKTDNEIQKLVVNNFSCLY 495
            L  + N +++V   +   +E+S K  +  + ++++ +NN+ CLY
Sbjct: 1456 LRCQINFVRSVMTTKNEWIEVSNKLFERGHFLKRIAMNNYLCLY 1499


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 229 LLGAFDGRKIAKKIDIPEECRKSPLVAGNDYNLVIGHNNSSALWILNLEDNSIKNVYLDR 408
           L+G   G     KI       KS +VA +      G + +S   +LN  + ++KN Y+ +
Sbjct: 402 LIGCSAGFVNVAKIKGTHTAMKSGIVAADAIVDAFGRDAASKPLLLNDYEENLKNTYVFK 461

Query: 409 EL 414
           EL
Sbjct: 462 EL 463


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 50  QWSITLQAQICLINGSMI*IFFQNFVKCLNLKIQI 154
           +W   L     LI G+ + IF     KCLNL +QI
Sbjct: 778 RWFFLLGLLTSLIQGASVPIFAYVISKCLNLFMQI 812


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 61  YVAGSNLFNQWFDDLDFFSEFRKMSKSEDPNFD 159
           Y    N  N WFD+   ++E  + +K  DP+ D
Sbjct: 183 YEMDQNALNSWFDNASQYAEANR-TKFTDPSVD 214


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 6/28 (21%), Positives = 19/28 (67%)
 Frame = +1

Query: 316 DYNLVIGHNNSSALWILNLEDNSIKNVY 399
           D+  ++ ++  +  W+++ +DNS++ +Y
Sbjct: 299 DFLAIVAYDMENGKWLVDEDDNSLRLIY 326


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 340 NNSSALWILNLEDNSIKNVYLDRELPLELSPKRNKTDNEIQKL 468
           NN S  W L       +N   +  LP+E     N + NE+ ++
Sbjct: 440 NNISVRWFLGATSAQNRNASSEAILPIEWEAVGNLSSNEMTRV 482


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 25  YLCLLFTTTMEYYVAGSNLFNQWFDDLDFFSEFRKMSKSEDPNFD 159
           Y+C LF  ++EY+    N   +  + L+   E R   + +  N D
Sbjct: 187 YMCFLFKRSVEYFTENGNRMARLKEQLERQVEKRMKPRRKLRNMD 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,462
Number of Sequences: 5004
Number of extensions: 56262
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)