Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7i06
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308 32 0.43
06_03_0379 - 20074459-20074490,20075023-20075845 29 2.3
11_06_0128 - 20389375-20389781,20389988-20392787 29 4.0
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 5.2
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 28 6.9
11_06_0119 + 20321687-20323624 27 9.2
08_02_0199 - 14160881-14161054,14161151-14161306,14161802-141619... 27 9.2
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292... 27 9.2
01_06_0767 + 31823659-31823734,31823859-31823979,31824078-318241... 27 9.2
>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
Length = 735
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 388 KNVYLDRE--LPLELSPKRNKTDNEIQKLVVNNFSCLYLTKGKNVYSGILPSY 540
+N+Y R+ PL +S KR T EI+ + NN + + NVY GIL +Y
Sbjct: 431 RNMYKSRKKGTPLYISGKRMFTAREIKVITNNNSTIIGRGAFGNVYLGILENY 483
>06_03_0379 - 20074459-20074490,20075023-20075845
Length = 284
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 IAKKIDIPEECRKSPLVAGNDYNLVIGHNNSSALWILNLEDNSIKNVYL-DRELPLELSP 432
+ K DI E+ + L DY L IGHN SS L + + +VY+ D E L
Sbjct: 174 VVYKADIGEQ-KLVKLTGIGDYALFIGHNTSSCLPVKDCHMLMPNHVYITDDEYLWLLEF 232
Query: 433 KRNKTDNEIQKLVVNNFS 486
+ + D I L N+ S
Sbjct: 233 RHKRRDVGIYSLENNSLS 250
>11_06_0128 - 20389375-20389781,20389988-20392787
Length = 1068
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 340 NNSSALWILNLEDNSIKNVY---LDRELP--LELSPKRNKTDNEIQKLVVNNFSCLYLTK 504
N SS+LW LN++ N++ V LP +S N+ + +VN L
Sbjct: 279 NISSSLWGLNIQQNNLVGVVPTDAFTALPELRTISMDNNRFHGRLPTSLVNVSHVRMLQL 338
Query: 505 GKNVYSGILPS 537
G N +SG +PS
Sbjct: 339 GFNFFSGTVPS 349
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -3
Query: 479 LLTTSFCISLSVLLRLGDNSRGNSLSK*T 393
+LTTSFC L+ L RL N RG+ +++ T
Sbjct: 1700 ILTTSFCKHLTSLQRLELNYRGSEVARLT 1728
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 469 VVNNFSCLYLTKGKNVYSGILPSYIDTSHCNGHIIDVACGYEHYMLLT 612
V++ + +Y G G LP ++ H++ VACG H +LT
Sbjct: 320 VLSMGNSVYGQLGNPNSDGRLPCLVEDRIAGEHVLQVACGSYHVAVLT 367
>11_06_0119 + 20321687-20323624
Length = 645
Score = 27.5 bits (58), Expect = 9.2
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 322 NLVIGHNNSSALWILNLEDNSIKNVYLDRELPLELSP--KRNKTDNEIQKLVVNNFSCLY 495
+LVI NN S N+E S++ +YL + P N T EIQ +++ S
Sbjct: 491 DLVISSNNISGSLPANMETMSLERLYLGSNQITGVIPILPPNLTWLEIQNNMLSG-SVAS 549
Query: 496 LTKGKNVYSGILPSYIDTSHCNGHIIDVACGYEHYMLL 609
T G G + + +++ GHI C +H L
Sbjct: 550 KTFGSAPQLGFMD--LSSNNIKGHIPGSICELQHLQYL 585
>08_02_0199 - 14160881-14161054,14161151-14161306,14161802-14161921,
14162046-14162143,14162969-14163041,14164472-14164619,
14165108-14165232,14165611-14165652,14165757-14166074,
14166633-14167559,14167584-14167852,14167946-14168255,
14169281-14169465,14170795-14170901,14171320-14171486
Length = 1072
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +1
Query: 400 LDRELPLELSPKRNKTDNEIQK------LVVNNFSCLYLTKGKNVYSGILPS 537
++RE+ L+ +K+D E K L V++ C YLT GK G+L S
Sbjct: 955 IEREICRRLAASGHKSDPEKPKSWPRFVLRVDHEMCTYLTSGKKTKLGLLSS 1006
>03_03_0184 +
15228045-15228405,15228725-15228883,15228984-15229258,
15229346-15229594,15229670-15229788,15229874-15229972,
15230068-15230176,15230281-15230421
Length = 503
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 322 NLVIGHNNSSALWILNLEDNSIKNVYLD 405
N ++ +NN + + I+NL+ +I N YLD
Sbjct: 245 NAILSNNNITNVTIINLKGVAIGNAYLD 272
>01_06_0767 +
31823659-31823734,31823859-31823979,31824078-31824189,
31824278-31824691,31824795-31824898,31825017-31825136,
31825344-31825467,31826567-31826680,31826789-31826980,
31827328-31827424,31827505-31827653,31828729-31829013
Length = 635
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 130 MSKSEDPNFDFRLANLMQINWSYNIFQLRKNLYLLGAFDGRKIAKKIDIPEECRKSPLVA 309
+S+ ED + LA QI + K L + G + + + + EE + + V
Sbjct: 509 LSEKEDYGNNSNLAKQCQIKEEKKV---SKKLTEVKIILGPESSSEPNKAEEHKAAQYVD 565
Query: 310 GNDYNLVIGHNNSSALWILNLED 378
N +N ++ SS+ W+ N+ED
Sbjct: 566 RNKFNTAGSNSASSSTWMFNVED 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,126
Number of Sequences: 37544
Number of extensions: 295482
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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