Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i06
         (625 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   4.5  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    24   4.5  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   6.0  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   7.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.9  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +1

Query: 424 LSPKRNKTDNEIQKLVVNNFSCLYLTKGKNVYSGILPSYIDTSHCNGHIIDVACGYEHYM 603
           ++PK N   ++I+K+      C++ ++    Y  +         C   +I   CG   Y 
Sbjct: 326 ITPKINDAADQIRKVAQAQRQCVFASEANLSYYSVYSRNNCELECEAKLILENCGCVLYY 385

Query: 604 L 606
           L
Sbjct: 386 L 386


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +1

Query: 424 LSPKRNKTDNEIQKLVVNNFSCLYLTKGKNVYSGILPSYIDTSHCNGHIIDVACGYEHYM 603
           ++PK N   ++I+K+      C++ ++    Y  +         C   +I   CG   Y 
Sbjct: 326 ITPKINDAADQIRKVAQAQRQCVFASEANLSYYSVYSRNNCELECEAKLILENCGCVLYY 385

Query: 604 L 606
           L
Sbjct: 386 L 386


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 369  IQYPKGTRIIVANNQVVVVTGNEWRFSALFWYIN----FLSDFPTVKGAQ 232
            + +P   R+  A+NQ+ +VT ++   +A F        FL+   TV G Q
Sbjct: 1166 VTFPDEERLNRASNQIAIVTTHQANTTAQFLVFRCMKYFLNPNVTVLGGQ 1215


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 396 NILYAIIFQIQYPKGTRIIVANNQVVVV 313
           N++Y  +  +Q P+G  II   + ++++
Sbjct: 658 NVMYDSVLDVQLPEGAEIIAFADDLLLL 685


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 396 NILYAIIFQIQYPKGTRIIVANNQVVVV 313
           NI+Y  + +++ P+G  +I   + +VV+
Sbjct: 644 NIMYDGVLRVELPEGASVIGYADDIVVM 671


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,346
Number of Sequences: 2352
Number of extensions: 12118
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)