Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7i05
(233 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 2.3
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 24 3.1
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 23 5.4
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 23 5.4
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 23 5.4
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 23 5.4
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 23 5.4
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 23 7.1
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 22 9.4
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 22 9.4
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 22 9.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 22 9.4
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 103 LNTTYTHCLF*SSTNQSFIEISQ 35
+++ Y+ + SS+NQSF+E+SQ
Sbjct: 896 IHSQYSFRGYCSSSNQSFLELSQ 918
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 194 IPPAFDPSVFVTP 156
IPP+ DPS++V P
Sbjct: 407 IPPSIDPSLYVFP 419
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = -2
Query: 187 LHSIPQCL*LLPD-SLER 137
LHSIP L L+PD S+ER
Sbjct: 62 LHSIPGSLHLVPDASIER 79
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 191 PPAFDPSVFVTPPRLIGAME 132
PP+ P V +PPR + A E
Sbjct: 226 PPSPPPPVLHSPPRKVSAQE 245
>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 87 VYVVFNCSYLEHTVRFHRSNESGRSYK 167
VY+ N V F S E GRSYK
Sbjct: 474 VYISCNVHTQARDVGFLLSQEKGRSYK 500
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 84 CVYVVFNCSYLEHTVRFHRSNESGRS 161
C V N S +VRFH +SGRS
Sbjct: 156 CSVAVINPSSQIVSVRFHPLGKSGRS 181
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 194 IPPAFDPSVFVTPPRLI 144
IP A DP + +TP +L+
Sbjct: 32 IPDAVDPKINLTPEKLV 48
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 191 PPAFDPSVFVTPP 153
PPA P V +TPP
Sbjct: 55 PPASSPDVRITPP 67
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 193 FRLHSIPQCL*LLPDS 146
FR ++IP+C LLP S
Sbjct: 102 FRGYTIPECQKLLPSS 117
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 118 NTLSVSIAPMSLGGVTNTEGSNAGGIFVQF 207
NT+ PMS E N+ FVQF
Sbjct: 138 NTMEKGSPPMSTTDFVGYEQGNSSSKFVQF 167
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 107 TIKHDIYTLFILVEHKSVF 51
T+ +DIYTL ++ H VF
Sbjct: 149 TLVYDIYTLCLVSWHHHVF 167
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 139 APMSLGGVTNTEGSN 183
AP GG+TNT +N
Sbjct: 1035 APAGFGGITNTATNN 1049
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 872,568
Number of Sequences: 5004
Number of extensions: 14957
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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