Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i05
         (233 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0719 + 20388246-20390756,20391159-20391263                       28   1.2  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    27   1.6  
01_01_0381 - 2961422-2963917                                           27   1.6  
04_04_0384 - 24853689-24853727,24853802-24853861,24854311-248543...    26   3.7  
03_01_0436 + 3384526-3385236,3387857-3388720                           25   6.5  
09_06_0353 + 22489265-22490401                                         25   8.6  
08_02_1538 + 27688443-27689051                                         25   8.6  
02_03_0053 - 14475106-14475126,14475171-14475512,14475969-144760...    25   8.6  
01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516     25   8.6  

>08_02_0719 + 20388246-20390756,20391159-20391263
          Length = 871

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 130 VSIAPMSLGGVTNTEGSNAGGIFV 201
           +S  PMSLG +TN E  N  G FV
Sbjct: 600 ISNLPMSLGNLTNLETLNLKGTFV 623


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 103 LNTTYTHCLF*SSTNQSFIE 44
           L   +THC+F S +N++FIE
Sbjct: 411 LTMIHTHCVFCSESNEAFIE 430


>01_01_0381 - 2961422-2963917
          Length = 831

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -3

Query: 174 LSVCNSSQTHWSDG--NGQ 124
           L +CNSS T+WS G  NGQ
Sbjct: 216 LKLCNSSVTYWSSGPWNGQ 234


>04_04_0384 -
           24853689-24853727,24853802-24853861,24854311-24854357,
           24854487-24854565,24855184-24855279,24855645-24855714,
           24855787-24855857,24856010-24856105,24856501-24856628,
           24856733-24856853
          Length = 268

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 151 LGGVTNTEGSNAGGIFVQFNXXCTSLV 231
           +G +TNT+G   G +  +FN   T+L+
Sbjct: 70  MGSLTNTQGLRFGVVVARFNEIVTNLL 96


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 114 LEHTVRFHRSNESGRSY 164
           L HTVR HR   S RSY
Sbjct: 294 LMHTVRTHRGGASDRSY 310


>09_06_0353 + 22489265-22490401
          Length = 378

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 194 IPPAFDPSVFVTPPRLIGAME 132
           +PPA  P+ +VTPP L+  ++
Sbjct: 42  LPPADRPARYVTPPALLPVVD 62


>08_02_1538 + 27688443-27689051
          Length = 202

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 186 CIRSLSVCNSSQTHWSDGNGQCVLNRNN*TRHIHTVY 76
           C+ S  +C+S Q    DG  +C L   +    +H V+
Sbjct: 25  CLPSNQICSSQQRKLLDGEMECSLELLDLCNAMHEVF 61


>02_03_0053 -
           14475106-14475126,14475171-14475512,14475969-14476099,
           14476198-14477230,14477495-14477702,14477761-14477807,
           14477906-14477971,14478644-14478804,14478985-14479118,
           14479244-14479452
          Length = 783

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 150 THWSDGNGQCVLNRNN*TRHIHTVYFSRAQI 58
           T+  DGN + V+NR + TR   T YF   Q+
Sbjct: 408 TYNEDGNLEDVVNRPSSTRTTLTEYFKMNQV 438


>01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516
          Length = 297

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 191 PPAFDPSVFVTPPRLIGAMETDSVF*IGTIKHDIYTLFILVEHKSVFH 48
           PP +DP+ F  P      M+ +  F    +   I TL   ++H S  H
Sbjct: 194 PPGYDPNAFFYPQYAYFGMQPNEYF--NLVLGAINTLSESIQHLSTGH 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,555,650
Number of Sequences: 37544
Number of extensions: 92471
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)