Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i04
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.0  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 75  VRRSKYITVINLINHLCL*KKKRSAKARFDYDSSRVQSYLEI*IPTRYCPK 227
           VR    +T  N+++H+      R+ K     D+S   SYL +     Y P+
Sbjct: 255 VRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPE 305


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 75  VRRSKYITVINLINHLCL*KKKRSAKARFDYDSSRVQSYLEI*IPTRYCPK 227
           VR    +T  N+++H+      R+ K     D+S   SYL +     Y P+
Sbjct: 255 VRPHLELTFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPE 305


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 525 ICVNLKIYLMYVHL 566
           +C NL  +++Y+H+
Sbjct: 417 VCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 525 ICVNLKIYLMYVHL 566
           +C NL  +++Y+H+
Sbjct: 417 VCFNLMYWIIYLHI 430


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 508 SNLLTHIYFFYNYFDCLQA 452
           +N+L   Y+FY+Y +  QA
Sbjct: 22  TNVLDFDYYFYDYSNRTQA 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,523
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)