Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7i02
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 119 4e-28
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 29 0.53
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.53
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.2
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 27 1.6
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 27 2.8
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 26 3.8
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 3.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.6
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 6.6
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 8.7
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 25 8.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 8.7
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 119 bits (286), Expect = 4e-28
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 5/163 (3%)
Frame = +2
Query: 140 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 319
+DLSEED +L+ +L +LV + +L +L L +IRTST+SMT+VPKPLKFLR H
Sbjct: 44 EDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPH 103
Query: 320 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 499
Y L ++Y+ K AD++SVL M S T K E LKY L G ++ WGH
Sbjct: 104 YFTLVKIYDSWPQSPQKTQLADILSVLGMSYSNT----SKHESLKYRLQGVTTDPSLWGH 159
Query: 500 EYVRQLEGEIAEEWNIEN-----MDSLLPLVRDVITFDMKHSA 613
EYVR L EI EE+ D L+ L ++ F + H+A
Sbjct: 160 EYVRHLASEIEEEFASRQEEEAPTDDLMELALTIVPFFLTHNA 202
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.53
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Frame = +2
Query: 230 PALQMLSNLIRTSTTSMTSVPKPLK---FLREHYPALKQVYEKITDEKTKKFCADVISVL 400
P++ L I + +M + LK ++ E PAL ++ I +EK K F + I +
Sbjct: 1805 PSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIPEEKKKSFLSMSIPI- 1863
Query: 401 AMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQL---EGEIAEEWNIENMD 559
A S +E A+ R+ + LL ++ D ++QL + + EE I+N++
Sbjct: 1864 AAHFSILVEHADARKRIGEKLLKIMAIQPDEAKAIIQQLSPRQKKCVEEILIQNVE 1919
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 152 EEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFL 310
EE + LQEE+N++ K L + V+ Y L M+ +L + +S++ + +L
Sbjct: 1609 EETEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYL 1661
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 221 LYFPALQM-LSNLIRTSTTSMTSVPKPLKFLREHY-PALKQVYEKITDEKTKKFCADVIS 394
++FPA + ++ +I TS + + FL H P L+ +YE + +EK++ F + S
Sbjct: 204 VFFPAAKATITQMIETSIRFLRT------FLDMHIKPQLQHIYESVVEEKSEAFASATSS 257
Query: 395 VLAMGVSGTL 424
+ +S ++
Sbjct: 258 KILSEMSASM 267
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 496 SPITYI*QCSQKTILQTLSLFCNFQSTAYAHR 401
SP+TY+ S ++ILQTL T Y +R
Sbjct: 325 SPVTYMISVSARSILQTLLAVAFLGETLYGNR 356
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 149 KDHHLEPLRAQLFPSLALQFY 87
+DH L+P R+ LF SL L Y
Sbjct: 222 QDHELKPKRSGLFSSLCLPIY 242
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +2
Query: 140 DDLSEEDKR-LQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLRE 316
++LSEED + +EL +L D E D + ++ L+ T +T+ + + +R
Sbjct: 247 EELSEEDMDGMFDELQLLPDDKK-REPDHF-----IMKTLVETLVL-LTATREGREHMRR 299
Query: 317 H--YPALKQVYEKITDEKTKKFCADVISVL 400
YP +++++ + DE+ ++ C ++ +L
Sbjct: 300 RKVYPIIRELHLNVDDEEIREVCDQLVQML 329
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 522 PSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTP 406
P+N + +SPT VP +Y +S+ A PL P
Sbjct: 450 PNNYEVSTIMRSPTISTVPPPKYLSNSINGAKFLNPLAP 488
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +2
Query: 314 EHYPAL-KQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGD 490
E+Y L +QVY+K T KTKK + S L + + TLE+ L L ++ D
Sbjct: 304 ENYRNLVRQVYDKDTYFKTKKDDLTLSSELLV-IPATLELISSMTSL-------LQSLAD 355
Query: 491 WGHEYVRQLEGEIAEEWNIENMDSLLPLVRD 583
G + + + E + E+ ++ MD + +V +
Sbjct: 356 -GTDELEEQEDSLMEDEDLSYMDDMSNVVNE 385
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.6
Identities = 27/72 (37%), Positives = 33/72 (45%)
Frame = -3
Query: 564 SESMFSIFHSSAISPSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTPIAKTEIT 385
S S SIF SA +PS +YS P S D + S FS TS TP + TE +
Sbjct: 80 SSSEPSIFSESA-TPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSS-EYTP-SSTESS 136
Query: 384 SAQNFFVFSSVI 349
S + SS I
Sbjct: 137 SLLDPSSVSSAI 148
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 434 EKRECLKYCLLGTLSNVGDWGHEYVRQLEGEIAEEWNIENM 556
EK EC CLL + ++G++ Y R L IAE+ + ++
Sbjct: 95 EKSECFIKCLLLLILSLGNYS-PYSRNLLYSIAEKLGLSSI 134
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 224 YFPALQMLSNLIRTSTTSMTSVPKPLKFL 310
+ PAL S T T S+TS PKP F+
Sbjct: 817 HLPALHKASLSKDTDTNSVTSDPKPHPFV 845
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 534 SAISPSNCLTYSCPQSPTFDNVPRRQYFKHSLFSATSRVPLTPIAKTEITSAQNFFVFSS 355
+A SP+ + T N P+++ F+ + + SR + PIA ++T + F+V S
Sbjct: 288 NAKSPTTNSVTDVAKDQTVTN-PKKRKFEVTDLARGSRPAIGPIAVLDMTVSSGFYVRSL 346
Query: 354 V 352
+
Sbjct: 347 I 347
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 585 TSRTSGKSESMFSIFHSSAISPSN 514
TSR S KS+S+ S I+PSN
Sbjct: 155 TSRKSNKSDSLASALSQLDINPSN 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,056
Number of Sequences: 5004
Number of extensions: 40791
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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