Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7i02
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 153 1e-37
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.16
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.16
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.16
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 32 0.28
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 28 6.1
Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z83217-6|CAD59136.1| 128|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z73102-17|CAA97418.2| 375|Caenorhabditis elegans Hypothetical p... 27 8.1
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 153 bits (370), Expect = 1e-37
Identities = 75/163 (46%), Positives = 107/163 (65%), Gaps = 5/163 (3%)
Frame = +2
Query: 140 DDLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLREH 319
+++SEED++L+E+LN+LV +L + LY P+L+ + LIR STTSMTSVPKPLKF+R H
Sbjct: 31 EEMSEEDQKLEEDLNLLVQRLSEPDTTLYKPSLETMRTLIRASTTSMTSVPKPLKFMRPH 90
Query: 320 YPALKQVYEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 499
Y +K+++ I KK CAD+ISVLAM E+ + + Y +LG+ +GDWGH
Sbjct: 91 YNKMKEIFTSIVAPDVKKLCADIISVLAMTSD------ERTDTINYRILGSHEPIGDWGH 144
Query: 500 EYVRQLEGEIAEEWNIENMD-----SLLPLVRDVITFDMKHSA 613
EYVR L E++EEW E LL L +D+++ MKH+A
Sbjct: 145 EYVRHLAMEMSEEWKKEGTSDARKAELLKLTQDIVSHHMKHNA 187
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.1 bits (72), Expect = 0.16
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 140 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 313
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 672 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 731
Query: 314 EHYPALKQVYEKITDE 361
E Y + EKI E
Sbjct: 732 EKYDRVHTDNEKILGE 747
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.1 bits (72), Expect = 0.16
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 140 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 313
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 314 EHYPALKQVYEKITDE 361
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.1 bits (72), Expect = 0.16
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 140 DDLSEEDKRLQEELNMLVDKL--LGNEVDLYFPALQMLSNLIRTSTTSMTSVPKPLKFLR 313
++L E+ RL+ E+N L DK L NE + ++ IR S ++ K L LR
Sbjct: 745 ENLLRENNRLKSEVNPLKDKYRDLENEYNSTQRRIEEKETQIRYSDDIRRNIQKDLDDLR 804
Query: 314 EHYPALKQVYEKITDE 361
E Y + EKI E
Sbjct: 805 EKYDRVHTDNEKILGE 820
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 317 HYPALKQVYEKITDEKTKKFCADVISVLAMGVS-GTLEVAEKRECLKYCLLGTLSNVGDW 493
H PA K YE+ EK + D ++ V +E+A+ RE L+ + S D
Sbjct: 62 HEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS 121
Query: 494 GHEYVRQLEGEIAEEWNIENMDSL 565
+ V ++E +IA+ N+++++ L
Sbjct: 122 KAKQVAEIEEKIAK--NVDDIEKL 143
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 143 DLSEEDKRLQEELNMLVDKLLGNEVDLYFPALQMLSNLIRTSTTSM----TSVPKPLKFL 310
D SEED L L LVDKL + L +L+ + N + S S+ + L+F
Sbjct: 493 DHSEEDNILLSSLKCLVDKL--ETISLQNISLEDVVNRLSESYKSLLARIVELESELEFE 550
Query: 311 REHYPALKQVYEKITDEKTKKF 376
+E AL++ K + +K +
Sbjct: 551 KEKNRALQETINKSSSADSKLY 572
>Z83217-7|CAL69737.1| 223|Caenorhabditis elegans Hypothetical
protein C10C6.7b protein.
Length = 223
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -1
Query: 173 PVGVCLPRKD----HHLEPLRAQLFP 108
P+ + +PRKD HHL LRA+L P
Sbjct: 26 PIDIHIPRKDSRHHHHLRHLRARLAP 51
>Z83217-6|CAD59136.1| 128|Caenorhabditis elegans Hypothetical
protein C10C6.7a protein.
Length = 128
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -1
Query: 173 PVGVCLPRKD----HHLEPLRAQLFP 108
P+ + +PRKD HHL LRA+L P
Sbjct: 26 PIDIHIPRKDSRHHHHLRHLRARLAP 51
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical protein
F16B12.6 protein.
Length = 1392
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 242 FVMLENINRLHCPKAYRLAYSIPPVGVCLPRKDHHLEPLRAQLFPSLALQFY 87
F++ EN N CP YSI P L +K ++L ++++ S AL Y
Sbjct: 852 FLLKENTNYKTCPFHLVYLYSINPKEPRLRKKIYYLMETQSKMVVSHALIMY 903
>Z73102-17|CAA97418.2| 375|Caenorhabditis elegans Hypothetical
protein B0035.16 protein.
Length = 375
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 416 GTLEVAEKRECLKYCLLGTLSNVGDWGHEYVRQLEGEI 529
G EVA+K E + C +G D+ EY+ G I
Sbjct: 191 GFQEVAKKPESMGICFIGKKKRFSDFLDEYIEPKPGRI 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,245
Number of Sequences: 27780
Number of extensions: 221779
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -