Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7i02
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.34 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   7.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 158 DKRLQEEL-NMLVDKLLGNEVDLYFPALQMLSNLIRT 265
           D RL+  + N+    + G+ VD+YF     LSN+ RT
Sbjct: 676 DARLRNTMENLTCATVKGSAVDMYFRRQVELSNMYRT 712


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 329 LKQVYEKITDEKTKKF-C--ADVISVLAMGVSGTLEVAEKRECLKYCLLGTLSNVGDWGH 499
           LK +YE  ++E+ KKF C  A V   L      TL V EK E     L  T  +  +  H
Sbjct: 37  LKSMYEANSEEQMKKFGCFEACVFQKLHFMDGNTLNV-EKLESGTREL--TPDDFTEDVH 93

Query: 500 EYVRQLEGEIAEE 538
           E + Q   + A+E
Sbjct: 94  EIIEQCVSKAADE 106


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 341 YEKITDEKTKKFCADVISVLAMGVSGTLEVAEKRECLKYCLLGTLS 478
           +EK   E+ KK   D +   A   S + E+   +  +  C L  LS
Sbjct: 241 HEKALREQAKKMNVDSLRSNANTSSQSAEIRIAKAAITICFLYVLS 286


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 473 LSNVGDWGHEYVRQLE 520
           + N G W  EY R+LE
Sbjct: 288 VKNSGQWLREYDRELE 303


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 317  HYPALKQVYEKITDEKT 367
            HYP L  +Y   TD+K+
Sbjct: 1469 HYPDLHNLYAVPTDKKS 1485


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 506 VRQLEGEIAEEWNIENMDSLLPLVR 580
           V + EG++  +  IE +D++LP  R
Sbjct: 143 VERKEGKVEGKCLIEALDAILPPTR 167


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 506 VRQLEGEIAEEWNIENMDSLLPLVR 580
           V + EG++  +  IE +D++LP  R
Sbjct: 159 VERKEGKVEGKCLIEALDAILPPTR 183


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 506 VRQLEGEIAEEWNIENMDSLLPLVR 580
           V + EG++  +  IE +D++LP  R
Sbjct: 216 VERKEGKVEGKCLIEALDAILPPTR 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,990
Number of Sequences: 438
Number of extensions: 2846
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)