Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7h14
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase ... 33 0.26
AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator prot... 33 0.26
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 31 0.60
Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 29 2.4
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 29 2.4
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 29 2.4
Z54235-6|CAA90975.3| 199|Caenorhabditis elegans Hypothetical pr... 29 4.3
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 29 4.3
Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical p... 28 5.6
Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF022980-3|AAG24187.2| 396|Caenorhabditis elegans Serpentine re... 28 5.6
Z82094-2|CAB05023.2| 279|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z67884-2|CAA91808.1| 429|Caenorhabditis elegans Hypothetical pr... 28 7.4
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 28 7.4
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 28 7.4
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 28 7.4
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 27 9.8
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 27 9.8
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 27 9.8
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 27 9.8
U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical... 27 9.8
>U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase
transcriptionalregulation mediator protein.
Length = 246
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 137 NFSRKYFTKINKMSFENNSNGNEKEERKYSHERNKSDELQLS-RTDMNMLIMNYLVTEGF 313
N+SR K F+N N ++EE K E K ++ + + M+++N L +E
Sbjct: 141 NYSRYNTAKGYYWEFKNKPNVKKREEEKKEDEEEKLEDRSTNFQKTRTMMLLNQLFSEMP 200
Query: 314 KEAALKFQQEAGLQE 358
E AL+ +++ ++E
Sbjct: 201 AEDALEREEKEEVEE 215
>AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator protein
6 protein.
Length = 250
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 137 NFSRKYFTKINKMSFENNSNGNEKEERKYSHERNKSDELQLS-RTDMNMLIMNYLVTEGF 313
N+SR K F+N N ++EE K E K ++ + + M+++N L +E
Sbjct: 145 NYSRYNTAKGYYWEFKNKPNVKKREEEKKEDEEEKLEDRSTNFQKTRTMMLLNQLFSEMP 204
Query: 314 KEAALKFQQEAGLQE 358
E AL+ +++ ++E
Sbjct: 205 AEDALEREEKEEVEE 219
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 146 WKNLRVFGINLNSFFVMYYKYFSFLVMLKNPKNLIMY 36
W +FG+ + F ++Y+ YF V+ N N I+Y
Sbjct: 83 WLEYSIFGVLMYLFAILYFTYFYLFVIYPNIINSIIY 119
>Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical
protein T04C12.2a protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 146 WKNLRVFGINLNSFFVMYYKYFSFLVMLKNPKNL 45
W+ L VF ++ FF+ Y + ++ ++ K PK +
Sbjct: 27 WQGLSVFSHSMLVFFIPIYGFTTYCILQKTPKTM 60
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 ELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAV 409
++ S TD N I NY K +K + +A LQ P L SS ++++ + + +
Sbjct: 64 QVSSSTTDQNNQI-NYFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFI 116
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 ELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAV 409
++ S TD N I NY K +K + +A LQ P L SS ++++ + + +
Sbjct: 144 QVSSSTTDQNNQI-NYFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFI 196
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 ELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAV 409
++ S TD N I NY K +K + +A LQ P L SS ++++ + + +
Sbjct: 144 QVSSSTTDQNNQI-NYFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFI 196
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 ELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAV 409
++ S TD N I NY K +K + +A LQ P L SS ++++ + + +
Sbjct: 64 QVSSSTTDQNNQI-NYFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFI 116
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 248 ELQLSRTDMNMLIMNYLVTEGFKEAALKFQQEAGLQEPALCSSLDERIMIREAV 409
++ S TD N I NY K +K + +A LQ P L SS ++++ + + +
Sbjct: 140 QVSSSTTDQNNQI-NYFDQTKIKTEYIKTEYDAHLQSPTLSSSTNQQLSVSDFI 192
>Z54235-6|CAA90975.3| 199|Caenorhabditis elegans Hypothetical
protein C09G9.5 protein.
Length = 199
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 137 LRVFGINLNSFFVM-YYKYFSFLVMLKNPKNLIMYV 33
+ +FGI+ N+ F+ +Y Y ++ K PKN + ++
Sbjct: 53 IAIFGISFNAIFLFAFYVYGLIRLIQKTPKNYVEFI 88
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 84 VFVIHNKERI-KVYSEYTQIFPENTLLKLIK*VSKTTVTAMKKKNVNIHTSATNPTNYN 257
VF + ++I K YSEY Q P L L + A++ N + H P NY+
Sbjct: 36 VFTVEKFDQILKAYSEYKQFMPSYVLEPLDNITDEQKTQAVQMVN-DYHAGKFEPKNYD 93
>Z70034-10|CAI79119.2| 560|Caenorhabditis elegans Hypothetical
protein C18E9.3c protein.
Length = 560
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 167 NKMSFENNSNGNEKEERKYSHERNKSDELQLSRTDM 274
N S +NN N K++ + ++NKS + +R DM
Sbjct: 457 NGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNRNDM 492
>Z70034-3|CAA93860.2| 620|Caenorhabditis elegans Hypothetical
protein C18E9.3b protein.
Length = 620
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 167 NKMSFENNSNGNEKEERKYSHERNKSDELQLSRTDM 274
N S +NN N K++ + ++NKS + +R DM
Sbjct: 517 NGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNRNDM 552
>Z70034-2|CAA93854.3| 623|Caenorhabditis elegans Hypothetical
protein C18E9.3a protein.
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 167 NKMSFENNSNGNEKEERKYSHERNKSDELQLSRTDM 274
N S +NN N K++ + ++NKS + +R DM
Sbjct: 520 NGNSNQNNPNNGRKQQHQPQQQQNKSGKFGQNRNDM 555
>AF022980-3|AAG24187.2| 396|Caenorhabditis elegans Serpentine
receptor, class w protein2 protein.
Length = 396
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 37 YIIKFLGFFSITRKLKYL*YITKKELRFI 123
Y+I L FF++ L +L +T+KELR I
Sbjct: 42 YVIAILQFFAVAINLIHLSVLTRKELRAI 70
>Z82094-2|CAB05023.2| 279|Caenorhabditis elegans Hypothetical
protein ZK525.2 protein.
Length = 279
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 4 HVVDVKYQVHTYIIKFLGFFSIT 72
H+ D K VH +II+FLG +T
Sbjct: 30 HLFDKKGSVHRFIIEFLGTLQVT 52
>Z67884-2|CAA91808.1| 429|Caenorhabditis elegans Hypothetical
protein T14G8.4 protein.
Length = 429
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 96 VLQILQFSCNAKKSQKLNYVCMHL 25
VL+ L+F NAK+S ++N V +HL
Sbjct: 52 VLRFLKFQWNAKQSVRMNKVPLHL 75
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 216 VNIHTSATNPTNYNYHGLT 272
V +HT++TN TN+ +GLT
Sbjct: 535 VEVHTNSTNSTNHQNNGLT 553
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 216 VNIHTSATNPTNYNYHGLT 272
V +HT++TN TN+ +GLT
Sbjct: 303 VEVHTNSTNSTNHQNNGLT 321
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 216 VNIHTSATNPTNYNYHGLT 272
V +HT++TN TN+ +GLT
Sbjct: 535 VEVHTNSTNSTNHQNNGLT 553
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 140 FSRKYFTKINKMSFENNSNGNEKEERKYSHERNKSDELQLSRT 268
F R Y K + E +K RKY + +SDE T
Sbjct: 1465 FHRSYLLKNEECEAEEERLSEKKNYRKYERDEEQSDEYSSEET 1507
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 305 EGFKEAALKFQQEAGLQEPAL 367
E +K A LKF+++ GL+EP +
Sbjct: 136 ERWKHAILKFEEDIGLEEPVI 156
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 305 EGFKEAALKFQQEAGLQEPAL 367
E +K A LKF+++ GL+EP +
Sbjct: 136 ERWKHAILKFEEDIGLEEPVI 156
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 305 EGFKEAALKFQQEAGLQEPAL 367
E +K A LKF+++ GL+EP +
Sbjct: 136 ERWKHAILKFEEDIGLEEPVI 156
>U29488-8|AAA68777.1| 320|Caenorhabditis elegans Hypothetical
protein C56C10.9 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 164 INKMSFENNSNGNEK--EERKYSHERNKSDELQLSRTDMNMLIMNYLVTEGFKEAA-LKF 334
+ M E + N+K +E +SH + SD QLS + M + +GF A LK
Sbjct: 30 VELMPLEKDGELNDKFRQEMIFSHNLDPSDSKQLSESIKEMFKKTDVNDDGFLTAGELKQ 89
Query: 335 QQEAGLQEPALCSSLDERI 391
Q ++E S D I
Sbjct: 90 QIRKNMEEHLEKSKNDSEI 108
>AF016657-14|AAB93663.3| 495|Caenorhabditis elegans Hypothetical
protein C16C4.13 protein.
Length = 495
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -3
Query: 227 VNIYVLLFHCRYCCFRNSFY*F**S---IFWKNLRVFGINLNSFFVMYYKYFSFLVMLKN 57
V I LF ++C RN Y F S IF+K L N+ F V YY SF +++
Sbjct: 288 VLILFKLFVLKHCRGRNMRYFFKFSQKLIFFKTLTGNYKNVEKFGVFYYDIRSFGIVINV 347
Query: 56 PKNL 45
P L
Sbjct: 348 PCTL 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,933
Number of Sequences: 27780
Number of extensions: 281175
Number of successful extensions: 901
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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