Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7h12
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    89   4e-19
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    29   0.38 
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   4.7  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
 Frame = +2

Query: 266 SMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQL---GKAKIGGSFELVNSEGKLVKSA 436
           S+ A ++          Y + EK++ L+R+  K L   G+ ++GG+F L++  G  V   
Sbjct: 55  SIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDN 114

Query: 437 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVD 589
           DF GK+ LIYFGFT CPDICPDEL+K++  +D+ +       + P+FI+ D
Sbjct: 115 DFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGD-VVYPIFITCD 164


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 401 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAE 523
           +VN   + +K AD+ GKW+ + F       +CP E+   +E
Sbjct: 17  VVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSE 57


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 440 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSP 559
           FLG+  +I  G T C D  P E  K   V  +   TPS P
Sbjct: 152 FLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIR-STPSQP 190


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 161 NRVSFVFRALSTTPVRQCAVPPKRTPKT 244
           N V F  R L +TP RQ   P   TP T
Sbjct: 122 NPVPFATRLLQSTPHRQLFPPTPSTPST 149


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 247 YADNMEV-NGSNRC-SWRRLDGFYDVCQKR 330
           Y +N  +  G++ C S  R+ GFYD C++R
Sbjct: 113 YPENFFILRGNHECASINRIYGFYDECKRR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,371
Number of Sequences: 5004
Number of extensions: 47073
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)