Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7h12
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 107 5e-24
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 76 2e-14
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 32 0.39
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 31 0.68
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 30 1.6
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 8.4
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 27 8.4
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 27 8.4
04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281... 27 8.4
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 8.4
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 107 bits (258), Expect = 5e-24
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Frame = +2
Query: 251 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 415
P++W S +V GGG+ + KK E L +++ +G A IGG F L+N +
Sbjct: 132 PVSWLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHD 191
Query: 416 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVD 589
GK V DF GKW L+YFGFTHCPDICPDEL+K+A +D K + + PVFI+VD
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID-KIKEKAKMEVVPVFITVD 248
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 76.2 bits (179), Expect = 2e-14
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Frame = +2
Query: 200 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEK---QEALDRERKKQL 370
P+RQ A + P+ P+ + + + ++V GL F+ Y +++ QEA K+
Sbjct: 56 PMRQFAEENEANPQ---PLIYYVVPSALLVFAGLVTFVHYNDEKRAVTQEAQQTSVPKRC 112
Query: 371 --GKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDK 544
+ IGG F+L ++E K V + G W L+YFG+T CPDI P E++K+A+VV L +
Sbjct: 113 TTNRPAIGGPFKLYDTENKEVTESKLRGNWTLMYFGYTSCPDIGPAEVQKMADVVKLLE- 171
Query: 545 TPSSPPLQPVFISVD 589
+ + P+FI++D
Sbjct: 172 SKYGTKITPLFITID 186
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 417 PSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 283
PS+ TSS + P + S S S +CF+ + PPPTT
Sbjct: 130 PSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 31.1 bits (67), Expect = 0.68
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +2
Query: 272 AATVVVGGGLTAFMMYVKKEKQ-EALDRERKKQLGKAKIGGSFE---LVNSEGKLVKSAD 439
A +V G+ A+ K+ + E +D R++ ++ G E +++++G +D
Sbjct: 142 AVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISD 201
Query: 440 FLGKWMLIYFGFTHCPDICPDELEKLAEVVD-LHDKTPSSPPLQPVFISVD 589
GK + +YFG CP C ++L E D L P + Q +FIS+D
Sbjct: 202 LNGKTIGLYFGAHWCPP-CRAFTKQLREAYDELKALRPGN--FQVIFISMD 249
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -2
Query: 438 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 280
SAL +P ++++ + A S L+ ++ +C +FL++ + PPP+T+
Sbjct: 81 SALRARIPPAVSTAR--SVLAASSNVNLTNAATNCLTFLSFSTHRLSPPPSTS 131
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 323 KKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSADFLG 448
K+E++E ++++KK+ K K G +G KS DF G
Sbjct: 571 KREEEEEEEKKKKKKKKKKKRSGKGRERKEKGIREKSGDFSG 612
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 404 VNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPP 562
+ ++G+ ++S + +L P+ EL +LA VD+ + SSPP
Sbjct: 162 MEAQGRYLQSVLRRAQQVLADHSLASSPEAATAELSELASAVDIECMSSSSPP 214
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 390 PPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTTVAA 271
PP F P + ++ F T + +PPPTTT A
Sbjct: 348 PPFFHHPYAGSTMATLSASAPFPTITLDLTQPPPTTTTTA 387
>04_04_1646 -
35027475-35027600,35027713-35027826,35027920-35028106,
35028262-35028379,35028699-35028827,35028947-35028998,
35029525-35029869
Length = 356
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 227 KRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAK 382
++ K L + KS + VG +T M VKKEKQ D+E+ K K
Sbjct: 293 QQNDKILNALLAKSSEDQMDVGRAIT--MYKVKKEKQRRKDKEKSSSSNKLK 342
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 335 QEALDRERKKQLGKAKIGGSFELV-NSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELE 511
++A + + L + G + V +G V ++ +GK +L+YF CP C L
Sbjct: 340 EKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP-CRAFLP 398
Query: 512 KLAEVVDLHDKTPSSPPLQPVFISVD 589
KL V + + + VFIS D
Sbjct: 399 KL--VNEYNKIKEKHNDFEIVFISSD 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,250
Number of Sequences: 37544
Number of extensions: 306277
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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