Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7h12
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical pr...   126   1e-29
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   9.9  
AC087232-5|ABA00173.1|  271|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical...    27   9.9  

>U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical
           protein C01F1.2 protein.
          Length = 312

 Score =  126 bits (304), Expect = 1e-29
 Identities = 52/110 (47%), Positives = 79/110 (71%)
 Frame = +2

Query: 260 WKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSAD 439
           WK++  T  VGG   A + Y+KK + +  ++ RK+  GKA+IGG +EL+N++GK+  S +
Sbjct: 96  WKTVLGTFAVGGTCLAALFYIKKIRLDEREKHRKQTAGKARIGGEWELMNTDGKMEGSQE 155

Query: 440 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVD 589
             G W+L+YFGFT+CPDICPDE+EK+ +VV++ +    + P+ PVFISVD
Sbjct: 156 LRGNWLLMYFGFTNCPDICPDEIEKMVKVVEIIEAKKDATPIVPVFISVD 205


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 401 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDEL 508
           +V+ + K++   D+ GKW++++F       +CP E+
Sbjct: 47  VVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82


>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 470 GFTHCPDICPDELEKLAEVVD 532
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical
           protein C25A8.2 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 470 GFTHCPDICPDELEKLAEVVD 532
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>AF098987-4|AAC67429.1|  496|Caenorhabditis elegans Hypothetical
           protein F40H3.1a protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 411 EFTSSKLPPIFAFPSCFFL-SRSSASCFSFL---TYIIKAVKPPPTTTVAA 271
           E T  +LP +  F +C F+ S+SSA C + L   TYI     PP + T +A
Sbjct: 165 ESTPKELPTVTKFTNCTFIRSQSSARCKAILPDTTYI--CTLPPVSATFSA 213


>Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical
           protein F33H2.1 protein.
          Length = 983

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 588 STDMKTGCKGGDDGVLSCKSTTSANFSNS 502
           ST+ KT  +GG DGV +C + +SAN   S
Sbjct: 477 STEAKTPARGGQDGVKTC-TISSANLFTS 504


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 458 LIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 574
           L+ +G  +CP +  + L+K   V + H      PP QP+
Sbjct: 280 LLAYGRQNCPGVIEEILKKPVHVPNDHSTQQPQPPEQPI 318


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +2

Query: 398 ELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 574
           E+V  E  L+   D L K   I    +  P      L+KLAE +   D    S P QPV
Sbjct: 127 EVVRCEKDLIDCTDLLRKAGRILKEGSESPLYTKSNLQKLAEALQKIDICHDSSPSQPV 185


>Z82282-5|CAB05270.1|  555|Caenorhabditis elegans Hypothetical
           protein T07G12.5 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -2

Query: 369 SCFFLSRSSASCFSFLTYIIKAVKPPPTTTVAAIDFHVIG---ISVFGVLLGGTAHCRTG 199
           SCF     S   ++    I K  +PPP+ T  A     IG    +++GV  G T +    
Sbjct: 285 SCFAAMIESIGDYNLCAKISKQSRPPPSNTNRAFVVEGIGCILAALWGVGTGVTTYAENI 344

Query: 198 VVLNARNTKLTRFRSMEFILLF 133
            +++   TK+T   +M+   +F
Sbjct: 345 AIMSV--TKVTSRITMQMAGVF 364


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 411 EFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 280
           ++   + PP     +   +SR+  S  +  T I+ +V PPPT+T
Sbjct: 18  KYVKRESPPTVPSLAATAVSRTRRSPIAASTLILSSVPPPPTST 61


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 446 GKWMLIYFGFTH-CPDICPD 502
           G W ++YFG  H C ++ PD
Sbjct: 169 GAWNMVYFGLYHSCREVIPD 188


>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 320 VKKEKQEALDRERKKQLGKAKIGGSF 397
           +K++  E L+RE+ ++L K ++GG F
Sbjct: 325 LKRDLFEQLEREQNEELPKMRVGGMF 350


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +2

Query: 164 RVSFVFRALSTTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEA 343
           R S    A S   V+  +     TPKT  P    S  ATV         M   +K++QE 
Sbjct: 344 RASAASAAASPPMVQDASFSSVLTPKTKAPEKIPSPPATVTSSTDSLEHMQRKRKKQQET 403

Query: 344 LDRERKKQLGK 376
            ++E+  +  K
Sbjct: 404 EEQEKAAKKAK 414


>AC087232-5|ABA00173.1|  271|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.3b protein.
          Length = 271

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 212 CAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFM 313
           CA PPK TPKTL      S+  +  + G +T +M
Sbjct: 27  CANPPKTTPKTLSDKI--SLPESYKISGSMTDWM 58


>AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.3a protein.
          Length = 637

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 212 CAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFM 313
           CA PPK TPKTL      S+  +  + G +T +M
Sbjct: 27  CANPPKTTPKTLSDKI--SLPESYKISGSMTDWM 58


>AC024776-11|AAK68461.1|  349|Caenorhabditis elegans Hypothetical
           protein Y41D4B.11 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 272 AATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVN 409
           AA  ++G G+T      KK+KQ+     + ++LG  K  G FE VN
Sbjct: 53  AAKNLMGSGITTKEEVKKKKKQKNAVLAQAEELGMKK--GKFETVN 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,135
Number of Sequences: 27780
Number of extensions: 269085
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)