Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g23
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   2.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    24   2.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    23   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 171  KISECIIALFELKQNNLNITKLLSSNLQNVI 79
            K+ + I+A +  K+NN+N+  L +S ++++I
Sbjct: 2006 KLRDLILADYA-KKNNINVASLTNSEVRDII 2035


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 116 MLRLFCFNSNNAI 154
           ++RL C++SNNAI
Sbjct: 707 LIRLLCYSSNNAI 719


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 117 ITKLLSSNLQNVIKQH 70
           +TKL S N +NV K+H
Sbjct: 434 LTKLYSPNSRNVTKKH 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,008
Number of Sequences: 5004
Number of extensions: 10271
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)