Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g23
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538...    25   8.4  

>12_01_0639 +
           5383967-5385951,5386973-5387066,5387410-5387841,
           5387935-5388219,5388324-5388641,5388756-5388983,
           5389264-5389364,5389447-5389552,5389782-5390132,
           5390262-5390401,5390687-5390861,5390937-5390954
          Length = 1410

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 80  LSNIHNGHQIHAFVLEVFFFPNCS 9
           L  +  G ++HA+ L  +F PN S
Sbjct: 416 LKALREGKELHAYALRRWFLPNIS 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,012,513
Number of Sequences: 37544
Number of extensions: 47710
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)