Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g23
         (260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
           protein K02A2.3 protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 80  ITFCKLLDSSFVMLRLFCFNSNN--AIIHSDIF 172
           + FC L D S  +  +FC N NN  A    D+F
Sbjct: 290 VDFCNLCDKSLYLESVFCANVNNDEASAEDDVF 322


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
            T06E4.1 protein.
          Length = 1295

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 192  IKNRQDIKISECIIALFELKQN 127
            +K++QDI+ISE   A+ +LKQ+
Sbjct: 1009 VKHQQDIQISEANEAMVKLKQD 1030


>Z81476-1|CAB03921.2|  431|Caenorhabditis elegans Hypothetical
           protein C25F9.1 protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 189 KNRQDIKISECIIALFELKQNNLNITKLLSSNLQN 85
           K   DIK S C++   ELK+    I +LL S L++
Sbjct: 259 KLESDIKFSTCLVEKSELKK---KIDRLLHSRLED 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,130,010
Number of Sequences: 27780
Number of extensions: 57226
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)