Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g23
         (260 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   1.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   1.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   1.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   4.4  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 217 NYNTMSSCN*KSSRYKNIRMYYSI 146
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 217 NYNTMSSCN*KSSRYKNIRMYYSI 146
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 217 NYNTMSSCN*KSSRYKNIRMYYSI 146
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 217 NYNTMSSCN*KSSRYKNIRMYYSI 146
           NYN  ++ N  ++ YK ++ YY+I
Sbjct: 93  NYNNYNNNNYNNNNYKKLQ-YYNI 115


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 110 SYCLVIYKM*LS--NIHNGHQIHAF 42
           S+C +I+   ++  +IHN + +H F
Sbjct: 571 SFCEMIHNAQVNKRSIHNNYPVHTF 595


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 112 CNVKIILF*FKQCYN 156
           CN++ + F F Q YN
Sbjct: 667 CNIQDMSFLFSQLYN 681


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 112 CNVKIILF*FKQCYN 156
           CN++ + F F Q YN
Sbjct: 757 CNIQDMSFLFSQLYN 771


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,961
Number of Sequences: 438
Number of extensions: 758
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)