Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g21
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    29   0.40 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   3.7  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.6  

>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 165 PTKEFEPFAGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALVN 293
           PT    PF   PP P  +   +R P       K T+++DAL N
Sbjct: 35  PTPNMSPFEQKPPLP--THMDVRRPSGPFRIVKATSTEDALTN 75


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 351  SKHTKPCQDVLHGIAPINTAVNSVTKPKPAGTDDGFKGEGAACGTSVVKVAHQ 509
            S++ + C++ LH + P   ++     PK     DG + + A    S++K  H+
Sbjct: 960  SQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDGVEKKEAKL-RSMIKTIHR 1011


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +3

Query: 270 NSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQD---VLHGIAPINTAVNSVTKPKPA 440
           N+++ +    K  T  +  +  K     KH  P  +   V+ G+APIN    S  +   A
Sbjct: 64  NNENIITTTPKHQTVITPKSYRKSVKRIKHDAPQNEDIPVMKGLAPINADTESKAESMAA 123

Query: 441 GTDDGFK 461
           G   G K
Sbjct: 124 GKVLGSK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,041
Number of Sequences: 5004
Number of extensions: 48998
Number of successful extensions: 180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)