Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7g21
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0167 + 14382976-14385244,14389373-14389842 30 1.2
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 29 2.2
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 29 2.9
11_06_0623 - 25607386-25607569,25608040-25608182,25608262-256085... 28 6.6
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766... 28 6.6
04_04_0207 + 23602065-23604315,23604611-23605116 28 6.6
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 28 6.6
10_01_0114 + 1423051-1424319 27 8.7
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 27 8.7
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183... 27 8.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 23 9.5
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -1
Query: 466 SPLKPS--SVPAGFGFVTEFTAVLIGAMPWSTSWHGLVCFDQSFSLTTLN 323
SPL + V GFG+ E G P S +W G+VC S+ L+
Sbjct: 324 SPLTTTLLQVAEGFGYPYELAKTWKGNDPCSPAWVGIVCTSSDVSMINLS 373
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 453 GFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDAT 569
GF+ G A G VV +M + S G+ PS+D T
Sbjct: 85 GFRRAGVAVGEGVVGARRRMRGAASTVGYMSGKPSDDTT 123
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 29.1 bits (62), Expect = 2.9
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Frame = +3
Query: 261 KPTNSQDALVNETKEVT----AASAFNVVKEKDWSKHTKPCQDVLH-GIAP--------I 401
KP + LV +++++ ++SA N +KE+ H PCQ+ G+AP
Sbjct: 239 KPPKPKRNLVEISQQISHQSSSSSAANDIKEE--KPHNPPCQEEKKSGMAPPPSPPPRPS 296
Query: 402 NTAVNSVTKPKPA-GTDDGFKGEGAACGTSVVKVAHQMISSRSPRGFTVASPSEDATA 572
+ S++ A F + + T+ A ++I SRS R A+P EDA A
Sbjct: 297 HRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIRSRSSRAAATAAPPEDAPA 354
>11_06_0623 -
25607386-25607569,25608040-25608182,25608262-25608513,
25609239-25609754
Length = 364
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/81 (20%), Positives = 29/81 (35%)
Frame = +3
Query: 195 SPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQ 374
SP +FF I ++ + +G PT ++ + A + V K +
Sbjct: 24 SPSQQSQAFFEIWLGQNSMQYGTPTMDTPSIAGDIVAANATAVHAAVDPAGGGKQYRTIA 83
Query: 375 DVLHGIAPINTAVNSVTKPKP 437
D L + N V + KP
Sbjct: 84 DALAAVPDANNTRRYVFRLKP 104
>09_06_0071 -
20675501-20675830,20676120-20676286,20676472-20676619,
20676768-20677205,20677667-20677741,20678000-20678283,
20678940-20679159
Length = 553
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 205 GGGDPANGSNSFVGFVFIHTGSVNPSLISGSL 110
G PA+ GF ++H+ S NP++ G+L
Sbjct: 474 GASIPADAKTGCKGFQYLHSTSPNPNVAMGAL 505
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 148 TGSVNPSLISGSLEAIFI 95
TG V PSL+SG+L A+F+
Sbjct: 482 TGRVPPSLVSGALPAVFL 499
>03_03_0001 + 13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/92 (27%), Positives = 36/92 (39%)
Frame = +3
Query: 258 GKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQDVLHGIAPINTAVNSVTKPKP 437
G PT AL + +S N ++ S P Q +A + +A N KPK
Sbjct: 786 GGPTQRASALAALSSAFNPSSQKNKGNDRPKSSDGGPTQRA-SAMAALTSAFNPSAKPKS 844
Query: 438 AGTDDGFKGEGAACGTSVVKVAHQMISSRSPR 533
G + AA ++ V SS+SPR
Sbjct: 845 PPQRAGQGSQRAAAVAALSNVLTAEGSSQSPR 876
>10_01_0114 + 1423051-1424319
Length = 422
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 258 GKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKPCQDVLHGIAPINTAVNSVTKPKP 437
G PT S V K + A S+ V+ K + KP LH I +N V P P
Sbjct: 185 GLPTTSVIP-VRSDKSLQAMSSSTVMAAKQFMFGVKPTTLALHSITIPARVINGVRGPTP 243
Query: 438 AGT 446
T
Sbjct: 244 TCT 246
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 327 NVVKEKDWSKHTKPCQDVLHGIAPINTAVNSVTKPKPAGTDDGFKGEG 470
+V+K D K + P + HGIA + ++V +P T+ GEG
Sbjct: 119 DVLKLVDQQKSSLPSSPINHGIAEQEESNHTVPQPFAPATEREDSGEG 166
>04_01_0160 +
1830671-1830779,1830898-1830971,1831374-1831671,
1831900-1832867,1833504-1833716,1834034-1834237,
1835063-1835104
Length = 635
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 325 STSSRRKTGRNTPSRAKMCSTASRQS 402
S SSR+ G PS ++ C+ ASRQS
Sbjct: 220 SLSSRQSYGDEIPSLSRNCNYASRQS 245
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 23.0 bits (47), Expect(2) = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 183 PFAGSPPPPEDSFFY 227
P+A PPPP S Y
Sbjct: 441 PYASYPPPPPGSSMY 455
Score = 22.6 bits (46), Expect(2) = 9.5
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 180 EPFAGSPPPP 209
+P+ G+PPPP
Sbjct: 417 QPYMGAPPPP 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,162
Number of Sequences: 37544
Number of extensions: 366350
Number of successful extensions: 1473
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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