Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g13
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   270   2e-73
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    69   6e-13
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   1e-06
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   5.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.5  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    25   7.5  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   7.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.5  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    25   9.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.9  
SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator c...    25   9.9  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  270 bits (661), Expect = 2e-73
 Identities = 128/170 (75%), Positives = 149/170 (87%)
 Frame = +2

Query: 164 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 343
           E+ +ILEERI GA  +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 344 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 523
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154

Query: 524 MRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKT 673
            RV +KAPGI+PR SV EPMQTG+KA+DS+VPIGRGQRELIIGDRQTGKT
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKT 204


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 35/104 (33%), Positives = 56/104 (53%)
 Frame = +2

Query: 362 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 541
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G P+D +GPI       +   
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166

Query: 542 APGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKT 673
           AP    + +  E ++TGIK VD L P  RG +  + G    GKT
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKT 210


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 416 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 589
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 590 GIKAVDSLVPIGRGQR 637
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 667 TSLTVTNDQLTLTTANWYQRVNSLDTSLHRLTHRHPGNDT 548
           TS   ++  L  +  N  QR++SLD+S       HPGN T
Sbjct: 154 TSDAYSSSILENSPPNKVQRLSSLDSSQDSFQEEHPGNVT 193


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 302 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 201
           P P  G    HK  ++   CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 448 LSDGNVYDSTSTLDNISFLDKLVIT 374
           L  GN+Y+STS  + +S LD   IT
Sbjct: 49  LEVGNIYNSTSASEILSTLDAKYIT 73


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 589 SLHRLTHRHPGNDTWRLNTDPHTGFR 512
           SLH  T  H  +D  R N+DP +  R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 465 TRPRICSPTGTSTIAP 418
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 123 HLANYMSQPPTKLPRSPPSSKRGSLEP 203
           H  +Y+S P      SPP+SK  S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 488 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG 667
           +D K PI+T  +        G I  V + E     IK   ++VPI   + E  +  R   
Sbjct: 125 VDHKVPIETTMKALKAFVDSGEISCVGLSEASAESIKRALAIVPIAAVETEYSLFSRDIE 184

Query: 668 K 670
           K
Sbjct: 185 K 185


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 111 QWPWHLANYMSQPPTKLPRSPPSSK 185
           Q P H  N+ S PP   P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710


>SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator
           complex subunit Med19 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 425 IVDVPVGEQIL--GRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP 559
           I D+P   +IL    +   L NPI  + PID +    V    PGIIP
Sbjct: 59  IQDLPGYNEILRDNTIKQWLTNPIREEVPIDIEFLHHVFSVEPGIIP 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,436
Number of Sequences: 5004
Number of extensions: 59369
Number of successful extensions: 192
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)