Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g12
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496...    80   1e-15
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983...    80   1e-15
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958...    71   5e-13
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275...    33   0.23 
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    28   6.5  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    27   8.5  
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    27   8.5  

>04_04_0989 -
           29948834-29948995,29949083-29949253,29949369-29949639,
           29950459-29950533,29950706-29950866
          Length = 279

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 39/81 (48%), Positives = 53/81 (65%)
 Frame = +2

Query: 344 LDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 523
           L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     + LV   ++ GAS
Sbjct: 82  LENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVVFAASAGAS 141

Query: 524 LCFFLSNLLGKKLVRKFFPER 586
            CFFLS L+GK LV   +P++
Sbjct: 142 SCFFLSKLIGKPLVFSLWPDK 162


>02_05_0383 -
           28497525-28497689,28497776-28497946,28498115-28498385,
           28499576-28499736
          Length = 255

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 41/94 (43%), Positives = 59/94 (62%)
 Frame = +2

Query: 305 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 484
           P +L++ + L   L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     
Sbjct: 44  PKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGG 103

Query: 485 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPER 586
           + LV   +  GAS C+FLS L+GK LV   +P++
Sbjct: 104 VALVVFAATAGASSCYFLSKLIGKPLVFSLWPDK 137


>03_05_0838 +
           28093752-28094011,28095238-28095508,28095640-28095810,
           28096238-28096369
          Length = 277

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 37/94 (39%), Positives = 54/94 (57%)
 Frame = +2

Query: 305 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 484
           P  L D + L   L  Y   Y    + G   +YIF+QTF IPG+IF+S+L+G LF     
Sbjct: 77  PRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKG 136

Query: 485 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPER 586
            +LV   +  GAS C+F+S L+G+ L+   +PE+
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPEK 170


>07_03_1534 +
           27526170-27526265,27527030-27527091,27527488-27527542,
           27528168-27528266,27528346-27528432,27528951-27529067,
           27529479-27529571,27529915-27529945,27530188-27530357
          Length = 269

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 395 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLV 565
           L Y+ L   A+P SI L++  G+LF      V     + IGA+  F L   +G+  V
Sbjct: 55  LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYV 110


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 395 LVYIFLQTF-AIPGSIFLSILSGFLFPFYFALVLVCC 502
           L+++ L+TF    G IF+    GF    YF LV++ C
Sbjct: 713 LIFLKLKTFYGTDGRIFIPGYKGFRCLKYFGLVMISC 749


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 410 LQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 523
           L T AI G +  + L  FLF     LV  CCCS  G S
Sbjct: 363 LSTGAIAGIVVGNAL--FLFAMLSLLVASCCCSTGGES 398


>10_08_0324 +
           16747117-16747330,16747432-16747559,16747675-16747744,
           16747832-16747988,16748089-16748701,16749132-16749653,
           16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 509 AIGASLCFFLSNLLGKKLVRKFFPER 586
           A+  ++CF +   LGKKL    FP+R
Sbjct: 509 AVREAMCFLMDKQLGKKLCYVQFPQR 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,319,413
Number of Sequences: 37544
Number of extensions: 169817
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)