Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7g07
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 26 0.80
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 25 1.4
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 25 1.4
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 23 4.3
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 23 4.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 23 5.6
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 23 5.6
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 23 5.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 23 7.4
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 22 9.8
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 22 9.8
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 22 9.8
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 22 9.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 22 9.8
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 0.80
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 247 FFFSSLNIYIILYFLHLHTQLVNHLKIAQESIYTVL----NLGQVKTTIHTMVSSRS 89
+FF++ + + L H +++NHL + + + VL NL + T + T+ S
Sbjct: 208 WFFNNESPSFLDVSLFAHAEIINHLPLKNDQLKVVLGTHKNLTDLTTRVRTLAGYTS 264
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 217 ILYFLHLHTQLVNHLKIAQESIYTVLNLGQVKTTIHTMV 101
IL LH H ++ ++ + YTVL L + T +H+MV
Sbjct: 74 ILRQLH-HPNIITLYQVFRVPKYTVLALEYMDTDLHSMV 111
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 1.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 22 LRSKWMCFDFSSIYFAFINNVSYYGW 99
+R ++ F++++FA + +SY GW
Sbjct: 136 IRLSFLPTHFTTVFFATLPELSYIGW 161
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 23.4 bits (48), Expect = 4.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 217 ILYFLHLHTQLVNHLKIAQESIYTVLNLGQVK 122
+L +HLHT+L++ I + + L+L + K
Sbjct: 113 VLESVHLHTKLIDGRPITNFASFNFLDLAENK 144
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 23.4 bits (48), Expect = 4.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Frame = -1
Query: 247 FFFSSLNIYIILY-----FLHLHTQLVNHLKIAQESIY 149
+FFS LNI I Y LH + H + E IY
Sbjct: 478 YFFSELNIASICYEISSGLAFLHNSGIAHHNLTTECIY 515
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 22 LRSKWMCFDFSSIYFAFIN 78
LRS W C DF + +IN
Sbjct: 1012 LRSTWNCIDFFVLVTLWIN 1030
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 205 LHLHTQLVNHLKIAQESIYTVLNLG 131
L LHT+L+ K S+ +LNLG
Sbjct: 7 LRLHTRLLLRSKFVLISLILLLNLG 31
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 70 FINNVSYYGWKPLCELWF*PD 132
++N+ S YG+ +LW PD
Sbjct: 234 WVNSTSSYGYDEQLKLWVQPD 254
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 22.6 bits (46), Expect = 7.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -1
Query: 247 FFFSSLNIYIILYFLHLHTQL 185
F++ LN+Y +LY H ++
Sbjct: 223 FYYMQLNVYYVLYEKMSHCEI 243
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 127 PDRDLKPCICSPVLFLDDLLIV 192
PDR+LK + LF+DD +V
Sbjct: 32 PDRELKEELVQRNLFVDDNYLV 53
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 247 FFFSSLNIYIILYFLH 200
FFF + YI +FLH
Sbjct: 123 FFFGGIVFYIFNHFLH 138
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 22.2 bits (45), Expect = 9.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 205 LHLHTQLVNHLKIAQESI 152
LHLH Q V H I E+I
Sbjct: 283 LHLHKQGVTHRDIKPENI 300
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 22.2 bits (45), Expect = 9.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 46 DFSSIYFAFINNVSYYGWKPLCELWF 123
D S + + Y GW C+L+F
Sbjct: 139 DPKSSVVSLMGEEDYLGWSRFCDLFF 164
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 22.2 bits (45), Expect = 9.8
Identities = 7/15 (46%), Positives = 9/15 (60%)
Frame = +1
Query: 76 NNVSYYGWKPLCELW 120
+ VS W PLC+ W
Sbjct: 215 DRVSGLDWYPLCQAW 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,474
Number of Sequences: 5004
Number of extensions: 12109
Number of successful extensions: 37
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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