Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g07
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    28   1.2  
04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123     27   2.8  
02_02_0399 - 9825365-9825912,9826019-9826190,9826325-9826442,982...    27   2.8  
02_03_0293 - 17372071-17372217,17372301-17372471,17373334-173734...    25   8.5  

>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 232 LNIYIILYFLHLHTQLVNHLKIAQESIYTVLNLGQVKTTIHTMVSSRSMKRY 77
           L ++ +L   H   + +  + I+Q+ +YT +    + T  H   +S  M+RY
Sbjct: 219 LRVHCLLGDYHTGLKCLAPIDISQQGVYTTVIGSHISTIYHYGFASLMMRRY 270


>04_04_0331 + 24472853-24473212,24474112-24474253,24474948-24475123
          Length = 225

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 151 ICSPVLFLDDLLIVYEDEENIE 216
           ICS  L   D+ ++Y D++N+E
Sbjct: 121 ICSSFLMRTDIFVLYTDDKNLE 142


>02_02_0399 -
           9825365-9825912,9826019-9826190,9826325-9826442,
           9826612-9826878,9826992-9827062,9827163-9827791,
           9827898-9828053,9828150-9828210
          Length = 673

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 214 LYFLHLHTQLVNHLKIAQESIYTVLNLGQVKTTIHTMVSS 95
           LY L+L + +V  LK +     T++N+G  + T H M+ +
Sbjct: 562 LYQLNLPSIVVPDLKYSVTVWRTIINIGVAEATYHAMLEA 601


>02_03_0293 -
           17372071-17372217,17372301-17372471,17373334-17373435,
           17373803-17374216,17374369-17374512,17374634-17375647
          Length = 663

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 86  ETLLIKAK*IEEKSKHIHFERKHKQ 12
           ETL+  AK   E SK + FE  H Q
Sbjct: 471 ETLMASAKWASEGSKLVAFENPHSQ 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,587,646
Number of Sequences: 37544
Number of extensions: 68360
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)