Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g07
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    29   0.58 
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    25   7.1  
AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    25   9.4  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    25   9.4  
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    25   9.4  

>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 247 FFFSSLNIYIILYFLHLHTQLVNHLKIAQESIYTV 143
           FFF+ + IY IL   +L T  VNH +  +  IY +
Sbjct: 30  FFFAFIIIYTILLPFYLFTNKVNHKRDNEMFIYPI 64


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 247 FFFSSLNIYIILYFLHLHTQLVNHLKIAQESIYTVLNLGQ-VKTTIHTMVSS 95
           FFF+ + IY IL   ++ T  +NH +  +  IY   +  Q VK +    VS+
Sbjct: 30  FFFAFIIIYTILLPFYVFTNKLNHKRDNEMFIYPTAHFCQMVKVSYLVFVSA 81


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 244 FFSSLNIYIILYFLHLHTQLVNHLKIAQESIYTVLN 137
           FF+ + IY ++   +++   VNH +  +  IY + N
Sbjct: 30  FFACIIIYTVVLPFYIYANKVNHERDKEILIYPITN 65


>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 22  LRSKWMCFDFSSIYFAFINNVSY 90
           + + W CFDF   Y  F N  +Y
Sbjct: 152 MENDWNCFDFVMEYMKFTNYRNY 174


>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
           protein H19N07.2c protein.
          Length = 1135

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  DFSSIYFAFINNVSYYGWKPLCE 114
           DF +IY  F NN+     +PLCE
Sbjct: 676 DFETIYVEFSNNIE----RPLCE 694


>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
           protein H19N07.2b protein.
          Length = 1130

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  DFSSIYFAFINNVSYYGWKPLCE 114
           DF +IY  F NN+     +PLCE
Sbjct: 676 DFETIYVEFSNNIE----RPLCE 694


>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
           protein H19N07.2a protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 46  DFSSIYFAFINNVSYYGWKPLCE 114
           DF +IY  F NN+     +PLCE
Sbjct: 676 DFETIYVEFSNNIE----RPLCE 694


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 16  LCLRSKWMCFDFSSIYFAFINNVSYYG 96
           LC    W     S I + FIN   YYG
Sbjct: 137 LCFSIPWFVAIMSWIIYNFINGKIYYG 163


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 16  LCLRSKWMCFDFSSIYFAFINNVSYYG 96
           LC    W     S I + FIN   YYG
Sbjct: 134 LCFSIPWFVAMMSWIIYNFINGKIYYG 160


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 133 RDLKPCICSPVLFLDDLLIVYEDEE 207
           +D +P      L +DDLLIV +D+E
Sbjct: 55  KDDEPSTSQKTLSVDDLLIVDDDDE 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,218,363
Number of Sequences: 27780
Number of extensions: 70460
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)