Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g06
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0325 + 24109469-24109665,24110284-24110400,24110497-241109...    29   2.9  
01_01_1222 + 9877607-9877691,9879235-9879390,9880070-9880148,988...    28   5.1  
07_03_1248 - 25165929-25166891,25169159-25169473                       28   6.7  
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    28   6.7  
03_01_0441 + 3418622-3420988                                           28   6.7  
11_04_0145 + 14082864-14082946,14083060-14083267,14083383-140835...    27   8.9  
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202...    27   8.9  
06_01_1163 - 9881721-9883169                                           27   8.9  

>05_05_0325 +
           24109469-24109665,24110284-24110400,24110497-24110914,
           24110997-24111416
          Length = 383

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 156 CTMSNIEPAHDLLDKVILRQLDLLEQKIKCELNI 257
           C MSNI PA   +  VI R   L  +K++C+  I
Sbjct: 87  CAMSNILPAMTFVMAVIFRMEKLELKKVRCQAKI 120


>01_01_1222 +
           9877607-9877691,9879235-9879390,9880070-9880148,
           9881471-9881711,9881794-9881868,9881960-9882094,
           9882634-9882821,9882915-9882983,9883060-9883150,
           9883262-9883396,9883675-9883740,9883823-9883935,
           9884020-9884110
          Length = 507

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 480 QNLHMAQKIFQTTLSYVVECSNIQLQLEENMK 575
           QN  + Q+ +QTTL  + E  N +L  + N+K
Sbjct: 165 QNFSLLQEFYQTTLKALEEAKNERLWFKTNLK 196


>07_03_1248 - 25165929-25166891,25169159-25169473
          Length = 425

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 YR*GFLDNQHCTMSNIEPAHDLLDKV 203
           Y+   L+  H ++  +EPAHD L+K+
Sbjct: 192 YQDMLLNQNHLSVHRVEPAHDQLEKI 217


>07_01_0010 +
           72162-74303,74470-74545,75971-76043,76496-76540,
           77916-78116,78463-78541,78637-78678,78788-78847,
           79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 483 NLHMAQKIFQTTLS--YVVECSNIQLQLEENMKNINALRKYLNII 611
           N+HMA+KIF   LS  +  +    ++ ++ + K  N  R Y++++
Sbjct: 585 NMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLV 629


>03_01_0441 + 3418622-3420988
          Length = 788

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 189 LLDKVILRQLDLLEQKIKCELNIESNVNNGSIHLAKSRYIMGQSSVSTTKLPTESSPDFS 368
           LL KV+ + + L++  I  E  + S  N+  +H+ +    +GQ S+S   +  +   +  
Sbjct: 177 LLKKVVAKHIPLIKMHI--EKKVCSEFNDWLVHIRRMAKQIGQVSISQASMARQKDEEMR 234

Query: 369 A 371
           A
Sbjct: 235 A 235


>11_04_0145 +
           14082864-14082946,14083060-14083267,14083383-14083599,
           14084170-14084276,14085521-14085674,14086848-14087029
          Length = 316

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 411 SSFHLLQLFYTLLKQKNR 358
           S FHL QLFY LLK   R
Sbjct: 127 SCFHLSQLFYPLLKDSGR 144


>11_04_0094 +
           13418604-13418680,13419331-13419400,13420078-13420236,
           13420334-13420445,13420530-13420649,13422249-13422406,
           13422987-13423217,13424621-13424713,13425088-13425227,
           13426331-13426401,13427554-13427637,13427752-13427846
          Length = 469

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 462 FGVLVPQNLHMAQKIFQTTLSYVVECSN 545
           FG  VP+++H AQK F    + +  CSN
Sbjct: 71  FGASVPRDIHEAQKTFAVLANPLDCCSN 98


>06_01_1163 - 9881721-9883169
          Length = 482

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 399 DGMTKLKLYQNKENTIVPLHWFGVLVPQNLHMAQKIFQTT 518
           D     +L  ++    VP+ W G+ VP +     ++F+ T
Sbjct: 393 DQFVNARLLVDEHRAAVPVSWGGIAVPPSADEVARVFEAT 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,022
Number of Sequences: 37544
Number of extensions: 265281
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)