Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7g05
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 717 VYF*HYSFTTHIKKVFTKQRIVRSSALLKI*LKINSIDAKDHL 589
           +++ HY    HI  VFTKQ+ V+    L +    N  D  D+L
Sbjct: 6   IHYQHY----HITPVFTKQKKVKEDTELNLQTIFNE-DKLDNL 43


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 294  PFPERNYNSCEMI 332
            P P  NYN+C+ I
Sbjct: 1655 PVPGSNYNTCDRI 1667


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 552 PLTFLKVARRSVETLVKINNIRSKYFKRN 466
           P+TF  VARRSV       N  S+ ++ N
Sbjct: 677 PITFQDVARRSVAN-SPTKNADSREYRSN 704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,597
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)