Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7f24
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 28 1.2
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 28 1.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 1.2
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 28 1.2
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 3.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.6
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 8.6
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.6
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 8.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 418 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGERR 528
+K+G +D V AHPFHVV + M S G R
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGADR 110
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 193 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGL 303
G+ A ++ IK I+ +GF G Y+GLSA +LG+
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGV 232
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 193 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 306
G+ M+L ++ I ++G G YRG+ MLG +
Sbjct: 45 GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 418 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGERR 528
+K+G +D V AHPFHVV + M S G R
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGADR 110
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 527 EHYSSLLGAIVSIYXDDGILGFLHG 601
+ Y+SL +V I+ +G++GF G
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRG 78
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 518 GKEEHYSSLLGAIVSIYXDDGILGFLHG 601
G +Y ++ AI IY +GI GF G
Sbjct: 261 GIGHNYKNIKSAIFHIYKTEGINGFFRG 288
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 426 RTQRHDHANGSSRYCSPVPC--CVSSNDGLIYWGKKNTTARCWAL*SLFTRTTVSLDSCM 599
+T+ D + C P PC C ++ + GK++ ARC + + T + C
Sbjct: 284 KTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCD 343
Query: 600 ALIP 611
L+P
Sbjct: 344 ELLP 347
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 503 WPHLLGKEEHYSSLLG-AIVS 562
WP + GKE Y + LG AI+S
Sbjct: 254 WPEIFGKEIRYRTFLGMAIMS 274
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 474 PVPC-CVSSNDGLIYWGKKNTTARCWAL*SLFTRTTVS 584
PV C CV I+ G + T RCW+L + T ++S
Sbjct: 341 PVLCVCVPKATHHIFSGGHDGTIRCWSLPANQTSDSIS 378
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 503 WPHLLGKEEHYSSLLGAIVSI 565
WP + GKE Y ++LG + +
Sbjct: 254 WPEVFGKEVRYRTVLGFLTML 274
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 465 NDCYRLHDHVSAS*FDVIFNFGFIIGDDV 379
NDC R ++H + S F + F+ DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,829
Number of Sequences: 5004
Number of extensions: 56613
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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