Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f24
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592...    33   0.18 
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    32   0.41 
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920...    31   0.54 
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     30   1.7  
09_04_0551 - 18488584-18490017                                         30   1.7  
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727...    30   1.7  
01_07_0289 + 42540059-42541141                                         28   6.7  
04_04_0058 - 22416949-22418196                                         27   8.9  

>03_02_0148 -
           5928703-5928931,5929099-5929171,5929288-5929408,
           5929907-5929952,5930361-5930571,5930837-5930986,
           5931122-5931179,5931285-5931400,5931986-5932091
          Length = 369

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 217 NVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 384
           N+FQ I+ +  SDG  G YRG+S  + G +A       VI +    L   N  PN+
Sbjct: 78  NIFQMIRTVWVSDGLKGFYRGISPGVTGSLATGATYFGVIESTKTWLEHSN--PNL 131


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 262 FGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 384
           FGC   L  +   +IA S+   +++  V   +P ++DPP +
Sbjct: 84  FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKL 124


>02_02_0469 +
           10691648-10691692,10691755-10691907,10692043-10692093,
           10692162-10692224,10692327-10693031,10693128-10693223,
           10693307-10695547
          Length = 1117

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 219 RFPVYKVHKGFGWFLRLLQGLISKNAWSYRRKSTHIEGNSS 341
           +FP  +  + F +   LL G + K   +Y+RK  H+E N S
Sbjct: 464 KFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKS 504


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 172 RRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS 315
           RR     G+P +   N F   K I +++GFF  +RG+ A +L  +A +
Sbjct: 254 RRMMLTSGQP-LKYKNAFHAAKQIVSTEGFFTLFRGVGANILSGMAGA 300


>09_04_0551 - 18488584-18490017
          Length = 477

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 199 PAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGID-LPEINDP 375
           P M+L +VF    Y  A        +   A     +A + ++SK    V    LP I DP
Sbjct: 18  PMMVLADVFLDHGYAVAVALINPSVKDDDAAFTAAVARA-VSSKSSATVSFHMLPRIPDP 76

Query: 376 PNIVTDDEPKVEDYIKLGRR 435
           P++  DD+    +Y  L RR
Sbjct: 77  PSLAFDDDKFFTNYFDLVRR 96


>01_07_0083 +
           40970890-40971015,40971886-40971994,40972679-40972790,
           40972944-40973100,40973609-40973761,40974143-40974292,
           40974803-40974999,40975446-40975473
          Length = 343

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +1

Query: 112 CHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSAR 291
           CHP++  K   Q+      PR    +    +     ++  +K I A +GF G Y+GL   
Sbjct: 258 CHPLDVVKKRFQIEGLKRHPRYGARI---ESSTYKGMYHALKEIVAKEGFGGLYKGLFPS 314

Query: 292 MLGLIAASQLT 324
           ++    A  +T
Sbjct: 315 LVKSAPAGAVT 325


>01_07_0289 + 42540059-42541141
          Length = 360

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 223 FQYIKYIKASDGFFGCYRGLSARMLGLIAASQLT 324
           +Q +  I  +DGFFG Y G +A +L  + A  L+
Sbjct: 197 WQVLLQILQTDGFFGLYAGYAATLLRNLPAGVLS 230


>04_04_0058 - 22416949-22418196
          Length = 415

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 199 GGQTGSWTGAEPKARTQAGLKLLRIPWDGIL 107
           GG TGS   A+P A T A  +    P D IL
Sbjct: 259 GGDTGSMPQADPVANTIAAAQQAAAPGDAIL 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,966
Number of Sequences: 37544
Number of extensions: 372038
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)