Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f24
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    50   1e-06
AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical...    33   0.12 
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC091267-3|AAK31563.3|  339|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 46  NMDEIEKERIAALPSQILVTTICHPMEYAKVLIQLGYEPLAPR--RSTTLFGRPAMILPN 219
           N+D + +  I +    ++  T  HP+   + LIQ GYEP      R    FG    ILPN
Sbjct: 61  NLDHLRQRSIQSEFQTLVAMTSVHPITVVRELIQFGYEPFPTTCGRKYIFFGEEMAILPN 120

Query: 220 VFQYIKYIKASDGFFGCYRGLSA 288
           +  Y+K +  +  F   ++GL +
Sbjct: 121 ILSYMKQLSKAKKFSTLFKGLDS 143


>AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical
           protein F43E2.7a protein.
          Length = 272

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
 Frame = +1

Query: 220 VFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDE 399
           +   +K +  + G+   + G+ + +  L      + +    +    P I  P      +E
Sbjct: 2   IINLVKQLGTTRGYITLWTGIDSAIAALAVQGIASHRTQQYIDEYYPNIGGPLLNQDKEE 61

Query: 400 PKVED------YIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIG 519
            ++ D       I+ G RD +++ VAV  A PF V   R +A  IG
Sbjct: 62  DELTDAESFRRVIRNGFRDSVIRVVAVTAARPFAVCFARQVAQVIG 107


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/69 (34%), Positives = 28/69 (40%)
 Frame = +1

Query: 109 ICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSA 288
           I  P EY K  +QL       R +T  F  P          +K      GFFG YRGLS 
Sbjct: 42  ITFPTEYVKTQLQLD-----ERSATPKFRGP-------IDCVKQTVNGHGFFGLYRGLSV 89

Query: 289 RMLGLIAAS 315
            + G I  S
Sbjct: 90  LLYGSIPKS 98


>AC091267-3|AAK31563.3|  339|Caenorhabditis elegans Hypothetical
           protein Y37B11A.3 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/69 (34%), Positives = 28/69 (40%)
 Frame = +1

Query: 109 ICHPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSA 288
           I  P EY K  +QL       R +T  F  P          +K      GFFG YRGLS 
Sbjct: 28  ITFPTEYVKTQLQLD-----ERSATPKFRGP-------IDCVKQTVNGHGFFGLYRGLSV 75

Query: 289 RMLGLIAAS 315
            + G I  S
Sbjct: 76  LLYGSIPKS 84


>Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical
           protein C54G10.4b protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/92 (27%), Positives = 39/92 (42%)
 Frame = +1

Query: 115 HPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSARM 294
           HP++  KV +Q    P    R T             F   K I   +GF G Y+G+S+ +
Sbjct: 22  HPLDTVKVRLQTQSGPTPQYRGT-------------FHCFKLIVQKEGFRGLYKGMSSPL 68

Query: 295 LGLIAASQLTSKVIVAVGIDLPEINDPPNIVT 390
           L L   S + + V    G    ++ DP +I +
Sbjct: 69  LSL---SAINAIVFGVHGGTCRQMEDPDSITS 97


>Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical
           protein C54G10.4a protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/92 (27%), Positives = 39/92 (42%)
 Frame = +1

Query: 115 HPMEYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSARM 294
           HP++  KV +Q    P    R T             F   K I   +GF G Y+G+S+ +
Sbjct: 22  HPLDTVKVRLQTQSGPTPQYRGT-------------FHCFKLIVQKEGFRGLYKGMSSPL 68

Query: 295 LGLIAASQLTSKVIVAVGIDLPEINDPPNIVT 390
           L L   S + + V    G    ++ DP +I +
Sbjct: 69  LSL---SAINAIVFGVHGGTCRQMEDPDSITS 97


>Z69662-5|CAA93500.3|  449|Caenorhabditis elegans Hypothetical
           protein F56D5.6 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 352 DLPEINDPPNIVTDDEPKVEDYIKLGR 432
           ++ E+N+  N++ D++  +ED ++L R
Sbjct: 292 NVEEVNESGNVILDEDENIEDNVELAR 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,455
Number of Sequences: 27780
Number of extensions: 311714
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)