Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f24
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 397 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMM 504
           +PK   ++       ++ TVA ++++PF  V  RMM
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMM 241


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 397 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMM 504
           +PK   ++       ++ TVA ++++PF  V  RMM
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMM 241


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 130 AKVLIQLGYEP 162
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 503 WPHLLGKEEHYSSL--LGAIVSIYXDDGILGFLH 598
           +P L+G  EHYS    +  I+S   ++   G+ H
Sbjct: 46  FPSLIGANEHYSKFFPVSEILSFLIEES--GYFH 77


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 76  AALPSQILVTTICHPM 123
           A LPS IL   + HP+
Sbjct: 346 AGLPSAILAMRLSHPL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,192
Number of Sequences: 438
Number of extensions: 4138
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)