Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7f21
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 83 3e-17
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.15
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.61
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 4.3
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 26 4.3
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 5.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 7.6
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 10.0
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 83.4 bits (197), Expect = 3e-17
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Frame = +3
Query: 219 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 395
LP +ST +L GS+ + + T + +TD PDFS Y+ K T D +
Sbjct: 19 LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65
Query: 396 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 575
+ +Y + F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66 ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119
Query: 576 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRD 674
+ KW+GKP+FIRHRT +EI +V + TLRD
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRD 152
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 129 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 257
YF+S+T A S + ++PT +EK++ LPL ST++T+ S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 81 YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 239
+R +S + G +AP ++ +++ PL PS ++LP ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 189 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 368
TP +++ P+P + SLPI L T +PA A + S D + K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372
Query: 369 TQDPTSKANETIDERQSFTY 428
P S A + +E+Q TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 492 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 659
VS ADV +L ++ + L E+P G + + + +F +HR + + E +P+
Sbjct: 71 VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 641 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 507
GRD ++C + K W S + ++ + FS+L LG I +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 673 SRSVSTGTAFSVEISSAVL*RINNGFPLHLKVTDFPSG 560
+R + A + SS V NGFP+ TD+PSG
Sbjct: 25 ARVAAGNAAINRRRSSPVENSPGNGFPVSEDATDYPSG 62
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +3
Query: 63 NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 221
NY ++ RN+ +N+ + G +S ++ P++ T S + PL
Sbjct: 49 NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108
Query: 222 PKTSTVETLHGSLPIQG 272
P TST T S+P G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 87 NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 257
NK N+++ G AP V+ N+L + + EK P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546
Query: 258 LPIQGLKV 281
P+ L +
Sbjct: 547 QPLTSLNM 554
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 211 TTVFSEGVGTTTRGFRLLATTW 146
T +F G+G + +G+ +A TW
Sbjct: 19 TVIFLHGLGDSGQGWSFMANTW 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,067
Number of Sequences: 5004
Number of extensions: 55486
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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