Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f16
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 90  EFENKDAIIVRNLKVWTPE 146
           EF++ ++I V++ ++W P+
Sbjct: 101 EFDSINSIRVKSYEIWVPD 119


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 120 RNLKVWTPEEKSIWRKVAKPK 182
           R +K+W    +  W+K  K K
Sbjct: 312 RQIKIWFQNRRMKWKKENKSK 332


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 154 DFSSGVQTFRFLTIIASLFSNSSK 83
           D +S ++  RFL II ++F N S+
Sbjct: 398 DQASFLERERFLGIINNIFKNMSQ 421


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = -3

Query: 391 SVNTSNWGTISAPVRSLTFLPLIVTVPSNGNVHFPANDTRNV 266
           S N + WG  + P+         +  PSN  +     +TR +
Sbjct: 836 SPNLTKWGNPNRPIVQSGIFGKYMVSPSNDALFVLNGETRTI 877


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 154 DFSSGVQTFRFLTIIASLFSNSSK 83
           D +S ++  RFL II ++F N S+
Sbjct: 398 DQASFLERERFLGIINNIFKNMSQ 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,244
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)