Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f15
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149     47   7e-06
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   2.0  
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177...    28   3.5  
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    27   4.6  

>04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149
          Length = 70

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 15/24 (62%), Positives = 23/24 (95%)
 Frame = +3

Query: 207 NPNFPILIRECSGIQPRVWARYER 278
           NP+ P+LIRECSG++P++WARY++
Sbjct: 43  NPSLPVLIRECSGVEPQLWARYDK 66


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 25   TPSVENLNQIINTIKTIES*NSEILKNS*LVKMALRLGGALKELRIHLCQTSKQSEGVRR 204
            T  + NL   ++ IKTI +   E    + + K    L   LK   IH+ QT +QSE ++R
Sbjct: 920  TDDILNLQLELDIIKTILA--EERTTRAEVEKRITCLDDELKAANIHILQTCRQSETMQR 977

Query: 205  K 207
            +
Sbjct: 978  E 978


>11_04_0068 -
           13116037-13116414,13116501-13116947,13117026-13117757,
           13118235-13118348
          Length = 556

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 198 EKENPNFPILIRECSGIQPRVWAR--YERGAEKSTPLTNLSANDVQSAIKQL 347
           E E  N P++  +    + R WAR  Y++ A+ +  + N     V  AIK+L
Sbjct: 234 EAEESNTPLVFGDIPHPRARNWARARYQKNADGTIFMPNAEDQRVYEAIKEL 285


>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 268 RAHTLG*IPLHSLINIGKLGFSFSLPQTVCWFDINVYAVLSVLLPGGVPFSRAMN 104
           R  T+G      ++++   G +  +PQ   WF + V+ V    L G +P +   N
Sbjct: 240 RNETVGAFKNLEVLDLSNSGIAGMVPQIDAWFSLAVFRVAGNALSGVMPEAMLQN 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,613
Number of Sequences: 37544
Number of extensions: 149445
Number of successful extensions: 286
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)