Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7f15
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical...    64   3e-11
U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U28733-4|AAA68305.2|  125|Caenorhabditis elegans Di-ras/rig/noey...    26   9.5  

>AL032652-10|CAA21708.2|   92|Caenorhabditis elegans Hypothetical
           protein Y63D3A.7 protein.
          Length = 92

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/52 (59%), Positives = 37/52 (71%)
 Frame = +3

Query: 192 GSEKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTNLSANDVQSAIKQL 347
           G +K NP FPILIRE SGI PRV+ARYE G E+   L +LS  +V+S I QL
Sbjct: 37  GIKKANPQFPILIREASGIVPRVFARYEHGVERVATLEDLSRENVKSTITQL 88



 Score = 35.9 bits (79), Expect = 0.012
 Identities = 17/28 (60%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121 MALRLGG-ALKELRIHLCQTSKQSEGVR 201
           M++RL G AL+E+RIH+CQ S  S GVR
Sbjct: 1   MSVRLAGTALREIRIHVCQKSPASAGVR 28


>U80837-4|AAB37905.1|  504|Caenorhabditis elegans Hypothetical
           protein F07E5.6 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 198 EKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTN 308
           +K++P+ P L+  CS + PR  A +  G+ +   + N
Sbjct: 460 QKQSPSLPALVSPCSSLSPRAHAHFS-GSHRLVMILN 495


>U28733-4|AAA68305.2|  125|Caenorhabditis elegans Di-ras/rig/noey2
           ras-like proteinhomolog protein 1 protein.
          Length = 125

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +1

Query: 250 NLECGRVMKEELKNQHLSQIYQQMM 324
           N+ECG +      N+++++++QQ++
Sbjct: 73  NMECGFIETSAKNNENITELFQQLL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,091,589
Number of Sequences: 27780
Number of extensions: 148404
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)